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D. rerio Gene: vrtn - ENSDARG00000061963 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061963
Namevrtn
Descriptionvertebrae development associated [Source:ZFIN;Acc:ZDB-GENE-060929-700]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153349
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
562
  • 562
  • 2.28e3
98.12
  • 98.12
  • 92.39
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
883
  • 883
  • 1.24e3
97.05
  • 97.05
  • 95.87
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.64e3
  • 1.64e3
94.50
  • 94.50
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
94.40
  • 94.40
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.42
  • 72.42
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.10
  • 64.10
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.11
  • 62.11
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.28
  • 57.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
51.97
  • 51.97
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.89
  • 47.89
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.76e4
  • 1.76e4
  • 1.85e4
  • 1.97e4
41.18
  • 41.18
  • 38.18
  • 33.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.80e4
  • 1.80e4
  • 1.81e4
39.79
  • 39.79
  • 39.36
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
2.11e4
  • 2.11e4
29.39
  • 29.39
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000061963 (vrtn)
ZFINZDB-GENE-060929-700 (vrtn)
EMBLBX255917
Uniprot/SPTREMBLZ4YHZ3, Z4YHZ3_DANRE

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