D. rerio Gene: rbm47 - ENSDARG00000061985 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000061985
Namerbm47
DescriptionRNA binding motif protein 47 [Source:ZFIN;Acc:ZDB-GENE-030131-9612]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-241e15.2, wu:fj94a03
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
814
  • 814
97.28
  • 97.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
847
  • 847
97.17
  • 97.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.40e3
  • 1.40e3
  • 1.49e3
  • 2.51e3
  • 3.32e3
  • 5.66e3
  • 5.86e3
95.31
  • 95.31
  • 95.02
  • 91.60
  • 88.89
  • 81.04
  • 80.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.02e3
  • 2.02e3
  • 2.17e3
  • 2.78e3
  • 3.16e3
  • 3.37e3
  • 3.92e3
  • 4.15e3
  • 4.26e3
  • 4.52e3
  • 5.13e3
  • 5.89e3
  • 6.04e3
  • 6.27e3
  • 6.79e3
  • 7.91e3
  • 1.48e4
  • 1.49e4
  • 1.50e4
93.24
  • 93.24
  • 92.74
  • 90.69
  • 89.43
  • 88.71
  • 86.89
  • 86.10
  • 85.73
  • 84.86
  • 82.82
  • 80.27
  • 79.78
  • 79.02
  • 77.27
  • 73.52
  • 50.61
  • 50.25
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.44
  • 92.44
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.30e3
  • 2.30e3
  • 2.84e3
92.32
  • 92.32
  • 90.50
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.59e3
  • 2.59e3
  • 1.26e4
91.34
  • 91.34
  • 57.82
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.76e3
  • 2.76e3
90.75
  • 90.75
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
3.13e3
  • 3.13e3
  • 4.89e3
  • 5.07e3
  • 5.29e3
  • 6.25e3
  • 6.65e3
  • 6.98e3
  • 7.35e3
  • 7.81e3
  • 7.90e3
89.51
  • 89.51
  • 83.61
  • 83.03
  • 82.30
  • 79.07
  • 77.72
  • 76.62
  • 75.40
  • 73.84
  • 73.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.05
  • 89.05
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.72e3
  • 3.72e3
  • 4.75e3
  • 5.45e3
87.53
  • 87.53
  • 84.10
  • 81.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.28
  • 84.28
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
83.74
  • 83.74
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.91e3
  • 4.91e3
83.56
  • 83.56
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.04e3
  • 5.04e3
83.14
  • 83.14
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.27e3
  • 6.27e3
79.01
  • 79.01
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
  • 7.95e3
  • 1.19e4
78.11
  • 78.11
  • 73.39
  • 60.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
  • 1.40e4
76.30
  • 76.30
  • 52.96
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.41e3
  • 9.41e3
68.50
  • 68.50
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.61e3
  • 9.61e3
67.82
  • 67.82
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.07e4
  • 1.07e4
64.31
  • 64.31
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.14e4
  • 1.14e4
  • 1.55e4
  • 1.78e4
61.88
  • 61.88
  • 47.99
  • 40.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.16e4
  • 1.16e4
  • 1.21e4
61.32
  • 61.32
  • 59.57
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.24
  • 50.24
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.15
  • 48.15
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.62e4
  • 1.62e4
45.82
  • 45.82
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.71e4
  • 1.71e4
42.88
  • 42.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000061985 (rbm47)
ZFINZDB-GENE-030131-9612 (rbm47)
EMBLBX901913
Uniprot/SPTREMBLA2BIC5, A2BIC5_DANRE

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