D. rerio Gene: hs2st1b - ENSDARG00000062008 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062008
Namehs2st1b
Descriptionheparan sulfate 2-O-sulfotransferase 1b [Source:ZFIN;Acc:ZDB-GENE-100304-1]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-18d1.2
Orthologs(s)7 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.86e3
  • 2.86e3
90.41
  • 90.41
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.69e3
  • 3.69e3
87.65
  • 87.65
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.84e3
  • 3.84e3
87.14
  • 87.14
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.23e3
  • 4.23e3
85.85
  • 85.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
4.77e3
  • 4.77e3
  • 4.89e3
84.03
  • 84.03
  • 83.63
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
5.40e3
  • 5.40e3
  • 9.54e3
81.91
  • 81.91
  • 68.06
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.74e3
  • 5.74e3
80.77
  • 80.77
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.07e3
  • 6.07e3
  • 6.69e3
79.66
  • 79.66
  • 77.61
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.36e3
  • 6.36e3
78.70
  • 78.70
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.49e3
  • 6.49e3
78.26
  • 78.26
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
6.59e3
  • 6.59e3
  • 6.75e3
  • 6.98e3
  • 7.08e3
  • 8.28e3
77.93
  • 77.93
  • 77.40
  • 76.63
  • 76.30
  • 72.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
7.07e3
  • 7.07e3
  • 7.28e3
76.34
  • 76.34
  • 75.61
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.07e3
  • 8.07e3
72.97
  • 72.97
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.02e3
  • 9.02e3
  • 1.06e4
69.80
  • 69.80
  • 64.43
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.51e3
  • 9.51e3
68.14
  • 68.14
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
67.85
  • 67.85
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.01
  • 62.01
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.69
  • 61.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.66
  • 57.66
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.35
  • 57.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.56
  • 56.56
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.62
  • 55.62
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.62
  • 54.62
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.13
  • 45.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000062008.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000062008.

Cross-references

EnsemblENSDARG00000062008 (hs2st1b)
ZFINZDB-GENE-100304-1 (hs2st1b)
EMBLCU019652
Uniprot/SPTREMBLF1QLG4, F1QLG4_DANRE, X1WG56, X1WG56_DANRE, X1WHH1, X1WHH1_DANRE

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