D. rerio Gene: fsd1 - ENSDARG00000062017 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062017
Namefsd1
Descriptionfibronectin type III and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-218]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-232d19.3
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.67e3
  • 6.67e3
77.66
  • 77.66
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.91e3
  • 6.91e3
  • 1.53e4
76.85
  • 76.85
  • 48.90
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.03e3
  • 7.03e3
  • 1.28e4
  • 1.32e4
  • 1.46e4
76.45
  • 76.45
  • 57.01
  • 55.95
  • 51.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.14e3
  • 9.14e3
  • 9.76e3
  • 1.04e4
  • 1.17e4
  • 1.22e4
  • 1.41e4
  • 1.44e4
  • 1.57e4
  • 1.57e4
69.38
  • 69.38
  • 67.34
  • 65.13
  • 60.71
  • 59.06
  • 52.67
  • 51.77
  • 47.38
  • 47.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
  • 1.26e4
66.02
  • 66.02
  • 57.90
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.07
  • 65.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.74
  • 56.74
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.44e4
  • 1.44e4
  • 1.75e4
51.68
  • 51.68
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.47e4
  • 1.47e4
  • 1.49e4
  • 1.57e4
50.86
  • 50.86
  • 50.26
  • 47.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.50e4
  • 1.50e4
  • 1.60e4
49.89
  • 49.89
  • 46.47
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.51e4
  • 1.51e4
49.41
  • 49.41
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.05
  • 49.05
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.30
  • 48.30
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.68
  • 38.68
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.68
  • 25.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.88
  • 23.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000062017.

Cross-references

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