D. rerio Gene: hmha1b - ENSDARG00000062049 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062049
Namehmha1b
Descriptionhistocompatibility (minor) HA-1 b [Source:ZFIN;Acc:ZDB-GENE-071213-2]
OrganismDanio rerio (zebrafish)
Synonym(s)hmha1
Orthologs(s)16 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
476
  • 476
98.41
  • 98.41
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
954
  • 954
96.81
  • 96.81
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
95.98
  • 95.98
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.18e3
  • 2.18e3
92.71
  • 92.71
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.65e3
  • 2.65e3
91.14
  • 91.14
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.84
  • 89.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.10
  • 89.10
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.72
  • 85.72
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
5.37e3
  • 5.37e3
  • 6.24e3
  • 8.45e3
  • 8.80e3
  • 8.96e3
82.01
  • 82.01
  • 79.10
  • 71.70
  • 70.55
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.74
  • 81.74
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.71
  • 81.71
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.65
  • 79.65
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.39e3
  • 6.39e3
78.61
  • 78.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.06
  • 78.06
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
6.94e3
  • 6.94e3
  • 1.39e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
76.76
  • 76.76
  • 53.30
  • 40.56
  • 40.18
  • 39.42
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.96
  • 74.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.56e3
  • 8.56e3
  • 9.05e3
  • 1.48e4
71.34
  • 71.34
  • 69.70
  • 50.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.42e3
  • 9.42e3
68.47
  • 68.47
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.76
  • 67.76
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.23
  • 67.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.08e4
  • 1.08e4
  • 1.34e4
63.82
  • 63.82
  • 55.17
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.18
  • 53.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.69
  • 46.69
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.32
  • 45.32
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.65e4
  • 1.65e4
  • 1.68e4
44.89
  • 44.89
  • 43.80
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.67e4
  • 1.67e4
  • 1.70e4
  • 1.84e4
  • 1.94e4
  • 1.95e4
43.97
  • 43.97
  • 42.91
  • 38.33
  • 35.20
  • 34.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.81e4
  • 1.81e4
39.30
  • 39.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000062049.

Cross-references

EnsemblENSDARG00000062049 (hmha1b)
ZFINZDB-GENE-071213-2 (hmha1b)
EMBLCU695074
Uniprot/SPTREMBLF1Q6Y5, F1Q6Y5_DANRE, F1QDJ8, F1QDJ8_DANRE

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