D. rerio Gene: rnf38 - ENSDARG00000062055 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062055
Namernf38
Descriptionring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
OrganismDanio rerio (zebrafish)
Synonym(s)fa94e11, si:dkey-20n3.1, wu:fa94e11
Orthologs(s)20 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.93e3
  • 2.93e3
90.20
  • 90.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.98e3
  • 2.98e3
90.04
  • 90.04
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.59e3
  • 3.59e3
  • 5.68e3
  • 9.16e3
  • 1.03e4
  • 1.04e4
87.98
  • 87.98
  • 80.98
  • 69.32
  • 65.57
  • 65.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.66e3
  • 3.66e3
  • 1.29e4
  • 1.54e4
87.75
  • 87.75
  • 56.69
  • 48.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.44e3
  • 4.44e3
  • 5.53e3
  • 6.43e3
  • 6.89e3
  • 8.86e3
  • 1.12e4
  • 1.25e4
  • 1.28e4
  • 1.31e4
  • 1.57e4
85.13
  • 85.13
  • 81.49
  • 78.48
  • 76.92
  • 70.32
  • 62.64
  • 58.28
  • 57.10
  • 56.04
  • 47.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.16
  • 84.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.28
  • 82.28
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.32e3
  • 5.32e3
82.21
  • 82.21
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
  • 9.41e3
79.79
  • 79.79
  • 68.49
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.60e3
  • 6.60e3
  • 1.34e4
77.89
  • 77.89
  • 55.00
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.62e3
  • 6.62e3
77.82
  • 77.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.55
  • 77.55
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.81e3
  • 6.81e3
77.21
  • 77.21
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
6.93e3
  • 6.93e3
  • 8.13e3
  • 9.55e3
  • 1.07e4
  • 1.11e4
  • 1.13e4
76.79
  • 76.79
  • 72.79
  • 68.03
  • 64.12
  • 62.73
  • 62.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.53
  • 76.53
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.02e3
  • 7.02e3
76.51
  • 76.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
76.42
  • 76.42
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
7.21e3
  • 7.21e3
  • 7.33e3
  • 7.77e3
  • 8.86e3
  • 8.90e3
  • 9.05e3
  • 9.11e3
  • 9.13e3
  • 9.74e3
  • 1.00e4
  • 1.03e4
  • 1.05e4
  • 1.12e4
  • 1.33e4
75.85
  • 75.85
  • 75.44
  • 73.97
  • 70.33
  • 70.19
  • 69.71
  • 69.49
  • 69.45
  • 67.38
  • 66.52
  • 65.56
  • 64.76
  • 62.54
  • 55.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.98
  • 74.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.64e3
  • 8.64e3
71.09
  • 71.09
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.72e3
  • 8.72e3
70.80
  • 70.80
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.95e3
  • 8.95e3
70.02
  • 70.02
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.18e3
  • 9.18e3
  • 9.62e3
69.26
  • 69.26
  • 67.81
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.02e4
  • 1.02e4
  • 1.11e4
  • 1.13e4
65.99
  • 65.99
  • 62.83
  • 62.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.79
  • 65.79
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.04e4
  • 1.04e4
65.04
  • 65.04
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
  • 1.18e4
63.24
  • 63.24
  • 60.45
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.35
  • 62.35
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.11
  • 62.11
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.22e4
  • 1.22e4
59.25
  • 59.25
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.22e4
  • 1.22e4
59.24
  • 59.24
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
55.84
  • 55.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000062055.

Cross-references

EnsemblENSDARG00000062055 (rnf38)
ZFINZDB-GENE-030131-8693 (rnf38)
EMBLCR936846
Uniprot/SPTREMBLE7FDX7, E7FDX7_DANRE

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