D. rerio Gene: clcn1a - ENSDARG00000062084 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062084
Nameclcn1a
Descriptionchloride channel, voltage-sensitive 1a [Source:ZFIN;Acc:ZDB-GENE-060503-333]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-14o18.5
Orthologs(s)17 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.26
  • 92.26
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.46e4
  • 1.46e4
51.18
  • 51.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.66
  • 47.66
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.57
  • 44.57
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.64
  • 43.64
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.75e4
  • 1.75e4
  • 1.78e4
41.44
  • 41.44
  • 40.49
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.79e4
  • 1.79e4
  • 1.81e4
  • 1.85e4
40.07
  • 40.07
  • 39.28
  • 37.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.49
  • 39.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Metazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000062084.

Cross-references

EnsemblENSDARG00000062084 (clcn1a)
ZFINZDB-GENE-060503-333 (clcn1a)
EMBLBX927218
Uniprot/SPTREMBLF1Q5M3, F1Q5M3_DANRE

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