D. rerio Gene: setd2 - ENSDARG00000062244 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062244
Namesetd2
DescriptionSET domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2140]
OrganismDanio rerio (zebrafish)
Synonym(s)fb97h09, hypb, wu:fb97h09

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.98e3
  • 1.98e3
93.39
  • 93.39
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
2.17e3
  • 2.17e3
  • 2.73e3
92.73
  • 92.73
  • 90.88
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.29e3
  • 3.29e3
89.00
  • 89.00
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.55e3
  • 3.55e3
88.13
  • 88.13
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
4.35e3
  • 4.35e3
  • 5.76e3
85.44
  • 85.44
  • 80.70
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
5.21e3
  • 5.21e3
  • 6.06e3
  • 7.02e3
  • 7.05e3
  • 9.18e3
82.55
  • 82.55
  • 79.73
  • 76.49
  • 76.40
  • 69.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.73e3
  • 5.73e3
80.81
  • 80.81
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
  • 7.83e3
79.23
  • 79.23
  • 73.78
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.85
  • 77.85
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000014Blastula:Sphere
6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 7.47e3
  • 8.96e3
77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 74.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.10
  • 77.10
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.89
  • 76.89
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.10e3
  • 7.10e3
76.23
  • 76.23
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.11e3
  • 7.11e3
76.21
  • 76.21
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
76.06
  • 76.06
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
75.22
  • 75.22
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.83e3
  • 7.83e3
  • 1.14e4
73.78
  • 73.78
  • 61.96
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.99e3
  • 7.99e3
  • 1.05e4
73.26
  • 73.26
  • 64.85
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
72.81
  • 72.81
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.19e3
  • 8.19e3
72.59
  • 72.59
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.64e3
  • 8.64e3
71.09
  • 71.09
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.92
  • 70.92
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.11e3
  • 9.11e3
69.49
  • 69.49
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.58e3
  • 9.58e3
67.92
  • 67.92
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.98
  • 61.98
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.41
  • 60.41
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.34e4
59.98
  • 59.98
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.34e4
  • 1.34e4
  • 1.41e4
55.24
  • 55.24
  • 52.92
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000062244 (setd2)
ZFINZDB-GENE-030131-2140 (setd2)
EMBLBX321920, CU138519
Uniprot/SPTREMBLF1QJI9, F1QJI9_DANRE

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