D. rerio Gene: edc4 - ENSDARG00000062266 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062266
Nameedc4
Descriptionenhancer of mRNA decapping 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5032]
OrganismDanio rerio (zebrafish)
Synonym(s)fe26b05, si:ch211-237c7.1, wu:fe26b05
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
986
  • 986
  • 2.06e3
  • 4.52e3
  • 7.47e3
96.70
  • 96.70
  • 93.11
  • 84.87
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.31e3
  • 1.31e3
95.61
  • 95.61
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.37e3
  • 1.37e3
  • 1.52e3
  • 1.76e3
  • 1.80e3
  • 1.82e3
  • 2.05e3
  • 2.75e3
  • 2.94e3
  • 3.06e3
  • 3.28e3
  • 4.63e3
  • 4.68e3
  • 4.68e3
  • 5.01e3
  • 1.46e4
  • 1.47e4
  • 1.49e4
95.42
  • 95.42
  • 94.91
  • 94.10
  • 93.98
  • 93.92
  • 93.14
  • 90.80
  • 90.17
  • 89.75
  • 89.01
  • 84.49
  • 84.34
  • 84.32
  • 83.22
  • 51.12
  • 50.90
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.60e3
  • 1.60e3
  • 2.44e3
  • 2.46e3
  • 2.74e3
  • 4.61e3
  • 5.04e3
  • 5.28e3
  • 5.46e3
  • 6.50e3
  • 9.80e3
94.65
  • 94.65
  • 91.84
  • 91.76
  • 90.83
  • 84.58
  • 83.14
  • 82.31
  • 81.73
  • 78.22
  • 67.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.11e3
  • 2.11e3
92.94
  • 92.94
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.12e3
  • 2.12e3
92.91
  • 92.91
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.13e3
  • 2.13e3
  • 2.17e3
  • 2.72e3
  • 2.97e3
  • 3.82e3
92.87
  • 92.87
  • 92.73
  • 90.89
  • 90.05
  • 87.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
2.14e3
  • 2.14e3
  • 2.16e3
  • 2.60e3
  • 2.71e3
  • 2.78e3
  • 3.60e3
92.85
  • 92.85
  • 92.77
  • 91.30
  • 90.93
  • 90.68
  • 87.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.17e3
  • 2.17e3
92.75
  • 92.75
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.60
  • 92.60
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.43e3
  • 2.43e3
  • 2.53e3
91.85
  • 91.85
  • 91.51
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
  • 7.12e3
88.68
  • 88.68
  • 76.16
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.49
  • 88.49
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.80e3
  • 3.80e3
87.29
  • 87.29
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.62e3
  • 4.62e3
  • 4.84e3
  • 8.59e3
84.54
  • 84.54
  • 83.80
  • 71.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.01
  • 81.01
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.48
  • 78.48
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
  • 7.28e3
77.88
  • 77.88
  • 75.62
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.04
  • 77.04
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.08e3
  • 7.08e3
  • 1.50e4
76.28
  • 76.28
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.29e3
  • 7.29e3
75.60
  • 75.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
73.21
  • 73.21
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
71.77
  • 71.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
70.76
  • 70.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.77e3
  • 8.77e3
70.65
  • 70.65
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.18
  • 70.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.03e3
  • 9.03e3
69.77
  • 69.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.34e3
  • 9.34e3
68.71
  • 68.71
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.52e3
  • 9.52e3
68.13
  • 68.13
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.35
  • 67.35
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.16
  • 67.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000062266.

Cross-references

EnsemblENSDARG00000062266 (edc4)
ZFINZDB-GENE-030131-5032 (edc4)
EMBLBX927175
Uniprot/SPTREMBLA5PN03, A5PN03_DANRE, F1R4F6, F1R4F6_DANRE

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