D. rerio Gene: C1GALT1 (1 to many) - ENSDARG00000062278 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062278
NameC1GALT1 (1 to many)
Descriptionsi:dkey-202e17.1 [Source:ZFIN;Acc:ZDB-GENE-060503-810]
OrganismDanio rerio (zebrafish)
Synonym(s)c1galt, t-synthase
Orthologs(s)11 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.67
  • 88.67
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.38e3
  • 7.38e3
75.29
  • 75.29
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.55
  • 61.55
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.76
  • 56.76
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.44e4
  • 1.44e4
51.65
  • 51.65
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
1.49e4
  • 1.49e4
  • 1.62e4
  • 1.78e4
  • 1.88e4
  • 1.92e4
50.14
  • 50.14
  • 45.74
  • 40.28
  • 37.05
  • 35.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.50e4
  • 1.50e4
  • 1.66e4
  • 1.71e4
49.86
  • 49.86
  • 44.49
  • 42.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.92
  • 48.92
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.71e4
  • 1.71e4
  • 1.75e4
  • 1.79e4
  • 1.81e4
42.90
  • 42.90
  • 41.54
  • 40.18
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.08
  • 37.08
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.37
  • 35.37
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.45
  • 31.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000062278.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Bilateria3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000062278.

Cross-references

EnsemblENSDARG00000062278 (C1GALT1 (1 to many))
HGNCHGNC:24337 (C1GALT1 (1 to many))
ZFINZDB-GENE-060503-810 (si:dkey-202e17.1)
EMBLBX842688, CR318650
Uniprot/SPTREMBLA3KQK4, A3KQK4_DANRE, F1R8T4, F1R8T4_DANRE

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