D. rerio Gene: si:ch211-233a24.2 - ENSDARG00000062330 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062330
Namesi:ch211-233a24.2
Descriptionsi:ch211-233a24.2 [Source:ZFIN;Acc:ZDB-GENE-090313-98]
OrganismDanio rerio (zebrafish)
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.93e3
  • 1.93e3
  • 3.45e3
93.53
  • 93.53
  • 88.46
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
  • 3.18e3
  • 4.43e3
  • 4.86e3
  • 5.38e3
  • 5.64e3
  • 6.95e3
  • 7.43e3
  • 7.73e3
  • 8.29e3
  • 8.85e3
  • 9.11e3
  • 9.32e3
  • 1.01e4
  • 1.35e4
  • 1.48e4
  • 1.50e4
93.33
  • 93.33
  • 89.37
  • 85.18
  • 83.74
  • 81.97
  • 81.10
  • 76.75
  • 75.14
  • 74.11
  • 72.23
  • 70.37
  • 69.48
  • 68.81
  • 66.19
  • 54.83
  • 50.61
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
2.15e3
  • 2.15e3
  • 5.78e3
  • 7.60e3
  • 8.66e3
  • 8.78e3
  • 1.09e4
92.80
  • 92.80
  • 80.63
  • 74.54
  • 71.00
  • 70.59
  • 63.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.73e3
  • 2.73e3
  • 2.97e3
  • 7.55e3
  • 8.03e3
90.85
  • 90.85
  • 90.06
  • 74.71
  • 73.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.82e3
  • 2.82e3
  • 5.79e3
  • 6.44e3
  • 6.67e3
  • 6.85e3
90.54
  • 90.54
  • 80.61
  • 78.45
  • 77.67
  • 77.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.86
  • 88.86
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
88.35
  • 88.35
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.87e3
  • 3.87e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.88e3
  • 3.88e3
  • 6.17e3
  • 9.79e3
87.02
  • 87.02
  • 79.35
  • 67.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.69e3
  • 4.69e3
84.31
  • 84.31
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.91e3
  • 4.91e3
83.55
  • 83.55
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.96
  • 82.96
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
82.01
  • 82.01
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.50e3
  • 5.50e3
  • 7.93e3
81.60
  • 81.60
  • 73.45
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.05
  • 78.05
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.81e3
  • 6.81e3
77.22
  • 77.22
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
6.89e3
  • 6.89e3
  • 7.42e3
  • 7.56e3
  • 7.57e3
  • 7.69e3
  • 8.02e3
  • 9.10e3
  • 1.09e4
  • 1.19e4
  • 1.24e4
76.92
  • 76.92
  • 75.15
  • 74.68
  • 74.64
  • 74.27
  • 73.16
  • 69.52
  • 63.39
  • 60.31
  • 58.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.40e3
  • 7.40e3
75.24
  • 75.24
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.95
  • 74.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.49e3
  • 7.49e3
74.92
  • 74.92
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.90e3
  • 7.90e3
  • 8.85e3
73.55
  • 73.55
  • 70.38
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.65
  • 72.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.29e3
  • 8.29e3
72.23
  • 72.23
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.49e3
  • 8.49e3
71.57
  • 71.57
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.88e3
  • 8.88e3
70.26
  • 70.26
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.05e3
  • 9.05e3
69.68
  • 69.68
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.20e3
  • 9.20e3
69.20
  • 69.20
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.90
  • 65.90
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.40
  • 64.40
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.31
  • 61.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria17 species17 genesCompare expression

Orthology information comes from OMA : ENSDARG00000062330.

Cross-references

EnsemblENSDARG00000062330 (si:ch211-233a24.2)
ZFINZDB-GENE-090313-98 (si:ch211-233a24.2)
EMBLCR555301, CT573111
Uniprot/SPTREMBLB8JIA1, B8JIA1_DANRE, F1R6K6, F1R6K6_DANRE

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