Gene: cacna1ea - ENSDARG00000062346 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000062346
Name	cacna1ea
Description	calcium channel, voltage-dependent, R type, alpha 1E subunit a [Source:ZFIN;Acc:ZDB-GENE-081104-526]
Organism	Danio rerio (zebrafish)
Synonym(s)	cacna1r, cacna1rea, si:dkey-21p1.1
Orthologs(s)	24 orthologs
Paralog(s)	12 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	5.11e3 5.11e3	82.89 82.89	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.13e4 1.13e4 1.15e4	62.26 62.26 61.36	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage	1.14e4 1.14e4 1.64e4 1.99e4	61.69 61.69 45.21 33.20	AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.82e4 1.82e4 2.23e4	39.21 39.21 25.48	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.87e4 1.87e4	37.33 37.33	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.96e4 1.96e4	34.25 34.25	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.97e4 1.97e4	33.87 33.87	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.99e4 1.99e4	33.46 33.46	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000198216 CACNA1E ENSMUSG00000004110 Cacna1e ENSPTRG00000001749 CACNA1E ENSGGOG00000011090 CACNA1E ENSMMUG00000014498 CACNA1E ENSRNOG00000002863 Cacna1e ENSBTAG00000020887 CACNA1E ENSSSCG00000015543 CACNA1E ENSECAG00000012027 CACNA1E ENSCAFG00000013004 CACNA1E ENSFCAG00000015444 CACNA1E ENSCPOG00000014861 CACNA1E ENSEEUG00000003927 CACNA1E ENSMODG00000006729 CACNA1E ENSOANG00000000975 CACNA1E ENSGALG00000003833 CACNA1E ENSACAG00000000106 CACNA1E ENSXETG00000012458 cacna1e	Compare expression	[+]
Bilateria	24 species Homo sapiens (human) Mus musculus (mouse) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog) Drosophila ananassae Drosophila mojavensis Drosophila virilis Drosophila yakuba	24 genes ENSG00000198216 CACNA1E ENSMUSG00000004110 Cacna1e FBgn0263111 cac WBGene00006742 unc-2 ENSPTRG00000001749 CACNA1E ENSGGOG00000011090 CACNA1E ENSMMUG00000014498 CACNA1E ENSRNOG00000002863 Cacna1e ENSBTAG00000020887 CACNA1E ENSSSCG00000015543 CACNA1E ENSECAG00000012027 CACNA1E ENSCAFG00000013004 CACNA1E ENSFCAG00000015444 CACNA1E ENSCPOG00000014861 CACNA1E ENSEEUG00000003927 CACNA1E ENSMODG00000006729 CACNA1E ENSOANG00000000975 CACNA1E ENSGALG00000003833 CACNA1E ENSACAG00000000106 CACNA1E ENSXETG00000012458 cacna1e FBgn0098581 GF21581 FBgn0137521 GI14770 FBgn0205890 GJ18738 FBgn0235037 GE17580	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000062346.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	5 genes ENSDARG00000006923 cacna1ab ENSDARG00000021735 cacna1ba ENSDARG00000037905 cacna1aa ENSDARG00000079295 cacna1bb ENSDARG00000095614 cacna1eb	Compare expression	[+]
Metazoa	12 genes ENSDARG00000006923 cacna1ab ENSDARG00000008398 cacna1c ENSDARG00000010933 cacna1fa ENSDARG00000021735 cacna1ba ENSDARG00000023683 cacna1fb ENSDARG00000029457 cacna1sa ENSDARG00000037905 cacna1aa ENSDARG00000042552 cacna1sb ENSDARG00000075917 cfap74 ENSDARG00000079295 cacna1bb ENSDARG00000095614 cacna1eb ENSDARG00000102773 cacna1da	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000062346.

Cross-references

Ensembl	ENSDARG00000062346 (cacna1ea)
ZFIN	ZDB-GENE-081104-526 (cacna1ea)
EMBL	BX927117, CR381643, CR450798
Uniprot/SPTREMBL	A0A0J9YIY1, A0A0J9YIY1_DANRE, B0UYF7, B0UYF7_DANRE