D. rerio Gene: sema4ab - ENSDARG00000062352 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062352
Namesema4ab
Descriptionsema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-78d16.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
658
  • 658
  • 3.90e3
  • 4.41e3
  • 7.20e3
97.80
  • 97.80
  • 86.96
  • 85.24
  • 75.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.56e3
  • 2.56e3
91.43
  • 91.43
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.23e3
  • 3.23e3
89.20
  • 89.20
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.71e3
  • 3.71e3
87.59
  • 87.59
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
3.79e3
  • 3.79e3
  • 4.78e3
  • 5.37e3
  • 5.53e3
  • 5.64e3
  • 5.79e3
  • 5.82e3
  • 6.20e3
  • 6.46e3
  • 8.00e3
  • 8.02e3
  • 8.51e3
  • 8.70e3
  • 8.81e3
87.31
  • 87.31
  • 84.01
  • 82.02
  • 81.50
  • 81.11
  • 80.61
  • 80.52
  • 79.25
  • 78.37
  • 73.20
  • 73.14
  • 71.52
  • 70.87
  • 70.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.83e3
  • 3.83e3
87.19
  • 87.19
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.85e3
  • 3.85e3
87.10
  • 87.10
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
3.98e3
  • 3.98e3
  • 4.69e3
  • 4.97e3
  • 5.18e3
  • 5.84e3
86.69
  • 86.69
  • 84.31
  • 83.34
  • 82.66
  • 80.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.12e3
  • 4.12e3
  • 9.44e3
86.21
  • 86.21
  • 68.41
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.86
  • 82.86
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
5.23e3
  • 5.23e3
  • 5.47e3
  • 6.44e3
  • 7.88e3
  • 8.73e3
  • 9.01e3
82.48
  • 82.48
  • 81.69
  • 78.44
  • 73.61
  • 70.76
  • 69.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.40e3
  • 5.40e3
81.92
  • 81.92
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.42e3
  • 5.42e3
81.84
  • 81.84
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
6.01e3
  • 6.01e3
  • 7.13e3
  • 7.55e3
  • 8.55e3
  • 1.05e4
  • 1.06e4
  • 1.08e4
  • 1.09e4
  • 1.18e4
  • 1.33e4
79.88
  • 79.88
  • 76.14
  • 74.72
  • 71.39
  • 64.99
  • 64.52
  • 63.92
  • 63.62
  • 60.65
  • 55.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.18
  • 79.18
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.88
  • 78.88
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.84e3
  • 6.84e3
77.11
  • 77.11
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.94
  • 75.94
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
74.86
  • 74.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.63e3
  • 7.63e3
74.46
  • 74.46
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
  • 1.16e4
71.78
  • 71.78
  • 61.31
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.98e3
  • 8.98e3
  • 9.45e3
  • 1.05e4
69.93
  • 69.93
  • 68.35
  • 64.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.08e3
  • 9.08e3
69.60
  • 69.60
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.88
  • 65.88
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.05e4
  • 1.05e4
  • 1.32e4
64.92
  • 64.92
  • 55.81
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.84
  • 64.84
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.22
  • 59.22
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.08
  • 54.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000062352 (sema4ab)
ZFINZDB-GENE-060503-363 (sema4ab)
EMBLBX927177, CR749746
Uniprot/SPTREMBLF1R501, F1R501_DANRE, F1R7Z2, F1R7Z2_DANRE

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