D. rerio Gene: scn3b - ENSDARG00000062359 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062359
Namescn3b
Descriptionsodium channel, voltage-gated, type III, beta [Source:ZFIN;Acc:ZDB-GENE-070920-2]
OrganismDanio rerio (zebrafish)
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
322
  • 322
  • 7.60e3
98.92
  • 98.92
  • 74.56
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
456
  • 456
98.48
  • 98.48
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
2.69e3
  • 2.69e3
  • 8.00e3
  • 1.37e4
  • 1.46e4
  • 1.48e4
91.00
  • 91.00
  • 73.21
  • 54.17
  • 51.24
  • 50.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.79
  • 89.79
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.15e3
  • 3.15e3
  • 3.82e3
89.47
  • 89.47
  • 87.20
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.21e3
  • 4.21e3
85.90
  • 85.90
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.43
  • 82.43
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.38e3
  • 6.38e3
78.63
  • 78.63
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.53e3
  • 6.53e3
  • 1.26e4
78.14
  • 78.14
  • 57.82
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.41
  • 72.41
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.11e3
  • 9.11e3
69.49
  • 69.49
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.00e4
  • 1.00e4
66.40
  • 66.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.93
  • 61.93
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.74
  • 60.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.58
  • 59.58
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.19
  • 52.19
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.41
  • 50.41
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.57
  • 45.57
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.46
  • 44.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000062359.

Cross-references

EnsemblENSDARG00000062359 (scn3b)
ZFINZDB-GENE-070920-2 (scn3b)
EMBLCR513784
Uniprot/SPTREMBLF8W4B3, F8W4B3_DANRE, F8W4M5, F8W4M5_DANRE

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