D. rerio Gene: PAXBP1 - ENSDARG00000062361 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062361
NamePAXBP1
Descriptionzgc:158234 [Source:ZFIN;Acc:ZDB-GENE-070112-2352]
OrganismDanio rerio (zebrafish)
Synonym(s)c21orf66, fsap105, gcfc, gcfc1
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
95.28
  • 95.28
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.45e3
  • 1.45e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.81e3
  • 1.81e3
93.93
  • 93.93
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.84e3
  • 1.84e3
  • 7.15e3
93.84
  • 93.84
  • 76.05
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
1.89e3
  • 1.89e3
  • 3.74e3
  • 3.91e3
  • 4.61e3
  • 4.86e3
  • 5.27e3
  • 8.01e3
  • 8.33e3
  • 8.35e3
  • 8.77e3
93.68
  • 93.68
  • 87.47
  • 86.91
  • 84.56
  • 83.72
  • 82.37
  • 73.18
  • 72.12
  • 72.05
  • 70.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.78
  • 92.78
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
  • 2.92e3
92.09
  • 92.09
  • 90.22
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
  • 3.21e3
  • 3.78e3
  • 7.89e3
92.01
  • 92.01
  • 89.26
  • 87.34
  • 73.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.58
  • 91.58
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.59e3
  • 2.59e3
91.32
  • 91.32
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.68e3
  • 2.68e3
91.03
  • 91.03
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.17
  • 89.17
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.43e3
  • 3.43e3
  • 3.80e3
88.53
  • 88.53
  • 87.27
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.20
  • 88.20
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.62e3
  • 3.62e3
87.87
  • 87.87
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.79
  • 86.79
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
4.04e3
  • 4.04e3
  • 4.04e3
  • 4.11e3
  • 4.17e3
  • 4.82e3
  • 4.92e3
  • 5.23e3
  • 5.60e3
  • 6.16e3
  • 6.38e3
  • 6.53e3
  • 6.54e3
  • 6.87e3
  • 6.89e3
  • 1.44e4
  • 1.45e4
  • 1.49e4
86.47
  • 86.47
  • 86.46
  • 86.25
  • 86.03
  • 83.88
  • 83.52
  • 82.49
  • 81.25
  • 79.39
  • 78.64
  • 78.15
  • 78.11
  • 77.00
  • 76.93
  • 51.88
  • 51.56
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
4.32e3
  • 4.32e3
  • 4.80e3
  • 5.20e3
  • 5.23e3
  • 5.32e3
  • 8.67e3
85.53
  • 85.53
  • 83.93
  • 82.59
  • 82.49
  • 82.18
  • 70.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.62e3
  • 4.62e3
  • 6.21e3
  • 7.26e3
84.52
  • 84.52
  • 79.19
  • 75.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
83.18
  • 83.18
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.09e3
  • 5.09e3
82.95
  • 82.95
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.18e3
  • 5.18e3
82.66
  • 82.66
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.62
  • 81.62
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.67e3
  • 5.67e3
81.01
  • 81.01
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
5.79e3
  • 5.79e3
  • 6.60e3
  • 7.24e3
  • 7.61e3
  • 9.18e3
80.61
  • 80.61
  • 77.90
  • 75.75
  • 74.53
  • 69.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.06e3
  • 6.06e3
79.72
  • 79.72
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.24e3
  • 6.24e3
79.12
  • 79.12
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.68e3
  • 6.68e3
77.63
  • 77.63
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.53
  • 71.53
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.66e3
  • 8.66e3
  • 9.52e3
71.01
  • 71.01
  • 68.12
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000062361.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000062361.

Cross-references

EnsemblENSDARG00000062361 (PAXBP1)
HGNCHGNC:13579 (PAXBP1)
ZFINZDB-GENE-070112-2352 (zgc:158234)
EMBLAL929315
Uniprot/SPTREMBLE7F1H6, E7F1H6_DANRE, E9QDJ4, E9QDJ4_DANRE, F1Q5X8, F1Q5X8_DANRE, F1QAG8, F1QAG8_DANRE, F1R179, F1R179_DANRE

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