D. rerio Gene: trim109 - ENSDARG00000062429 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062429
Nametrim109
Descriptiontripartite motif containing 109 [Source:ZFIN;Acc:ZDB-GENE-060616-101]
OrganismDanio rerio (zebrafish)
Synonym(s)cb336, sb:cb336, zgc:136894
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
3.56e3
  • 3.56e3
  • 1.23e4
  • 1.25e4
  • 1.32e4
  • 1.39e4
  • 1.46e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
  • 1.54e4
  • 1.59e4
  • 1.60e4
88.10
  • 88.10
  • 58.87
  • 58.22
  • 55.84
  • 53.49
  • 51.17
  • 50.20
  • 49.92
  • 49.81
  • 48.55
  • 46.70
  • 46.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.29e3
  • 5.29e3
82.27
  • 82.27
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
5.43e3
  • 5.43e3
  • 1.29e4
  • 1.29e4
  • 1.31e4
81.84
  • 81.84
  • 56.86
  • 56.79
  • 56.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.92
  • 80.92
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.01e3
  • 6.01e3
79.89
  • 79.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.71e3
  • 6.71e3
77.54
  • 77.54
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.72e3
  • 6.72e3
  • 7.82e3
  • 9.81e3
  • 1.04e4
  • 1.05e4
  • 1.12e4
  • 1.13e4
  • 1.21e4
  • 1.47e4
  • 1.54e4
77.52
  • 77.52
  • 73.81
  • 67.14
  • 65.17
  • 64.91
  • 62.42
  • 62.14
  • 59.60
  • 50.72
  • 48.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.64
  • 69.64
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
64.22
  • 64.22
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.12e4
  • 1.12e4
  • 1.25e4
  • 1.32e4
  • 1.33e4
62.48
  • 62.48
  • 58.31
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.20e4
  • 1.20e4
  • 1.21e4
59.98
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.25e4
  • 1.25e4
  • 1.31e4
  • 1.51e4
58.06
  • 58.06
  • 56.04
  • 49.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.52e4
  • 1.52e4
  • 1.68e4
49.09
  • 49.09
  • 43.84
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.75
  • 46.75
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.51
  • 46.51
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.85
  • 39.85
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.91
  • 33.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.34e4
  • 2.34e4
21.64
  • 21.64
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000062429.

Cross-references

EnsemblENSDARG00000062429 (trim109)
ZFINZDB-GENE-060616-101 (trim109)
EMBLBC117661, BX005429
Uniprot/SPTREMBLQ1ECU9, Q1ECU9_DANRE

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