D. rerio Gene: lyve1b - ENSDARG00000062483 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062483
Namelyve1b
Descriptionlymphatic vessel endothelial hyaluronic receptor 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9516]
OrganismDanio rerio (zebrafish)
Synonym(s)fj84c10, lyve-1, lyve1, lyve1l, si:dkey-5a9.3, wu:fj84c10

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.59e3
  • 3.59e3
87.99
  • 87.99
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.64e3
  • 6.64e3
  • 1.01e4
77.78
  • 77.78
  • 66.16
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
76.03
  • 76.03
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.39e3
  • 7.39e3
  • 1.54e4
75.27
  • 75.27
  • 48.45
AEIR
  • AEIR
  • AEIR
UBERON:0001631thoracic duct
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002065posterior cardinal vein
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 9.51e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 68.17
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002465lymphoid system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
8.49e3
  • 8.49e3
  • 1.21e4
  • 1.24e4
  • 1.50e4
  • 1.55e4
71.58
  • 71.58
  • 59.60
  • 58.53
  • 49.71
  • 48.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.61
  • 70.61
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.20e3
  • 9.20e3
69.20
  • 69.20
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.23
  • 67.23
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
  • 1.17e4
66.67
  • 66.67
  • 60.74
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.35
  • 63.35
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.76
  • 62.76
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.51
  • 58.51
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.25
  • 54.25
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.74
  • 51.74
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002042lymphatic vessel endothelium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003088caudal vein
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2005319intersegmental lymph vessel
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 1.70e4
48.40
  • 48.40
  • 42.92
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.67e4
  • 1.67e4
44.04
  • 44.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.84
  • 43.84
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.96
  • 42.96
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.86
  • 37.86
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.93
  • 28.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000062483 (lyve1b)
ZFINZDB-GENE-030131-9516 (lyve1b)
EMBLBX571951
Uniprot/SPTREMBLA3KQB0, A3KQB0_DANRE

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