D. rerio Gene: zc3h18 - ENSDARG00000062506 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062506
Namezc3h18
Descriptionzinc finger CCCH-type containing 18 [Source:ZFIN;Acc:ZDB-GENE-050419-13]
OrganismDanio rerio (zebrafish)
Synonym(s)nhn1, si:ch211-218c6.1
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
821
  • 821
  • 913
  • 2.74e3
  • 4.82e3
  • 5.13e3
97.26
  • 97.26
  • 96.95
  • 90.84
  • 83.87
  • 82.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
957
  • 957
  • 1.40e3
  • 2.12e3
  • 2.84e3
  • 3.82e3
  • 3.96e3
96.80
  • 96.80
  • 95.31
  • 92.89
  • 90.49
  • 87.23
  • 86.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.02e3
  • 1.02e3
96.60
  • 96.60
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.16
  • 93.16
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
2.07e3
  • 2.07e3
  • 2.74e3
  • 2.79e3
  • 2.93e3
  • 3.03e3
  • 3.41e3
  • 4.21e3
  • 5.10e3
  • 5.52e3
  • 6.34e3
  • 7.63e3
  • 7.74e3
  • 8.14e3
  • 8.24e3
93.08
  • 93.08
  • 90.82
  • 90.67
  • 90.19
  • 89.85
  • 88.59
  • 85.91
  • 82.92
  • 81.53
  • 78.77
  • 74.46
  • 74.09
  • 72.76
  • 72.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.21e3
  • 2.21e3
92.59
  • 92.59
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
2.59e3
  • 2.59e3
  • 2.89e3
  • 3.17e3
  • 3.50e3
  • 3.82e3
  • 3.85e3
  • 4.27e3
  • 5.51e3
  • 5.61e3
  • 7.57e3
91.32
  • 91.32
  • 90.32
  • 89.38
  • 88.28
  • 87.20
  • 87.10
  • 85.71
  • 81.54
  • 81.23
  • 74.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.67e3
  • 2.67e3
91.05
  • 91.05
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
  • 7.07e3
90.68
  • 90.68
  • 76.32
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.10
  • 88.10
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.65e3
  • 3.65e3
  • 4.46e3
  • 7.19e3
  • 8.11e3
87.79
  • 87.79
  • 85.07
  • 75.92
  • 72.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.72e3
  • 3.72e3
87.55
  • 87.55
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.32
  • 87.32
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.86e3
  • 3.86e3
87.08
  • 87.08
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.03e3
  • 4.03e3
86.50
  • 86.50
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
86.39
  • 86.39
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.11e3
  • 4.11e3
86.24
  • 86.24
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.13e3
  • 4.13e3
86.17
  • 86.17
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.22e3
  • 4.22e3
85.88
  • 85.88
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.23e3
  • 4.23e3
85.83
  • 85.83
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
  • 8.35e3
85.79
  • 85.79
  • 72.04
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.16
  • 85.16
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.69e3
  • 4.69e3
  • 5.91e3
  • 7.80e3
84.28
  • 84.28
  • 80.21
  • 73.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.38
  • 83.38
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.16e3
  • 5.16e3
  • 1.00e4
82.72
  • 82.72
  • 66.38
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.27e3
  • 5.27e3
82.37
  • 82.37
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
82.29
  • 82.29
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.90e3
  • 5.90e3
  • 7.58e3
80.24
  • 80.24
  • 74.62
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
79.59
  • 79.59
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.23e3
  • 9.23e3
69.10
  • 69.10
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.56e3
  • 9.56e3
68.00
  • 68.00
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.68e3
  • 9.68e3
67.57
  • 67.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi14 species14 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000062506.

Cross-references

EnsemblENSDARG00000062506 (zc3h18)
ZFINZDB-GENE-050419-13 (zc3h18)
EMBLAL935038, BX950194
Uniprot/SPTREMBLQ1LUF0, Q1LUF0_DANRE
Uniprot/SWISSPROTQ1LUE5, ZCH18_DANRE

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