D. rerio Gene: rc3h1a - ENSDARG00000062550 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062550
Namerc3h1a
Descriptionring finger and CCCH-type domains 1a [Source:ZFIN;Acc:ZDB-GENE-050208-702]
OrganismDanio rerio (zebrafish)
Synonym(s)rc3h1, rc3h1 {eco:0000313|ensembl:ensdarp00000085027,gn eco:0000313|zfin:zdb-gene-050208-702}, si:dkey-192m14.4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.32e3
  • 6.32e3
78.83
  • 78.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
7.68e3
  • 7.68e3
  • 9.00e3
74.28
  • 74.28
  • 69.85
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.97e3
  • 7.97e3
73.32
  • 73.32
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.08e3
  • 8.08e3
72.94
  • 72.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.71e3
  • 8.71e3
  • 9.27e3
70.84
  • 70.84
  • 68.98
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
8.75e3
  • 8.75e3
  • 1.13e4
  • 1.18e4
  • 1.31e4
  • 1.48e4
70.69
  • 70.69
  • 62.02
  • 60.32
  • 56.24
  • 50.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.84e3
  • 8.84e3
70.40
  • 70.40
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.44e3
  • 9.44e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.66e3
  • 9.66e3
67.65
  • 67.65
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.59
  • 63.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.58
  • 62.58
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.06
  • 59.06
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.43
  • 58.43
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.61
  • 57.61
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
  • 1.34e4
57.44
  • 57.44
  • 55.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
  • 1.63e4
57.14
  • 57.14
  • 45.54
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.38e4
  • 1.38e4
53.95
  • 53.95
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.41e4
  • 1.41e4
  • 1.83e4
52.79
  • 52.79
  • 38.59
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.05
  • 51.05
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.95
  • 47.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.85
  • 46.85
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.89
  • 35.89
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.57
  • 27.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000062550 (rc3h1a)
ZFINZDB-GENE-050208-702 (rc3h1a)
EMBLBX908392
Uniprot/SPTREMBLQ1LV60, Q1LV60_DANRE

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