D. rerio Gene: SATB1 - ENSDARG00000062621 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062621
NameSATB1
DescriptionSATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]
OrganismDanio rerio (zebrafish)
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
763
  • 763
  • 907
  • 1.09e3
  • 1.62e3
  • 1.69e3
  • 7.34e3
  • 1.27e4
  • 1.50e4
  • 1.54e4
  • 1.81e4
97.45
  • 97.45
  • 96.97
  • 96.35
  • 94.57
  • 94.36
  • 75.44
  • 57.54
  • 49.76
  • 48.45
  • 39.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
766
  • 766
97.44
  • 97.44
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
860
  • 860
97.12
  • 97.12
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
888
  • 888
  • 981
  • 994
  • 1.20e3
  • 1.44e3
  • 1.58e3
  • 1.61e3
  • 1.66e3
  • 1.67e3
  • 1.86e3
  • 2.20e3
  • 2.28e3
  • 3.21e3
97.03
  • 97.03
  • 96.72
  • 96.67
  • 96.00
  • 95.19
  • 94.71
  • 94.61
  • 94.43
  • 94.42
  • 93.77
  • 92.64
  • 92.35
  • 89.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
907
  • 907
96.97
  • 96.97
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
1.13e3
  • 1.13e3
  • 1.96e3
  • 2.08e3
  • 2.17e3
  • 1.42e4
96.21
  • 96.21
  • 93.44
  • 93.02
  • 92.73
  • 52.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.34e3
  • 1.34e3
95.51
  • 95.51
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.48e3
  • 1.48e3
  • 1.91e3
  • 3.44e3
  • 7.55e3
95.03
  • 95.03
  • 93.62
  • 88.49
  • 74.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.57e3
  • 1.57e3
  • 2.48e3
94.75
  • 94.75
  • 91.70
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
  • 7.95e3
93.85
  • 93.85
  • 73.40
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.09e3
  • 2.09e3
  • 8.26e3
  • 1.28e4
93.00
  • 93.00
  • 72.34
  • 56.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.07e3
  • 3.07e3
89.72
  • 89.72
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
3.65e3
  • 3.65e3
  • 1.19e4
  • 1.62e4
  • 1.67e4
87.80
  • 87.80
  • 60.01
  • 45.88
  • 44.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.46
  • 79.46
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
76.83
  • 76.83
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.04
  • 59.04
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.68
  • 58.68
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.42
  • 57.42
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.64
  • 55.64
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.50
  • 55.50
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.45e4
  • 1.45e4
  • 1.74e4
51.50
  • 51.50
  • 41.82
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.35
  • 51.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.50e4
  • 1.50e4
49.80
  • 49.80
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.25
  • 46.25
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.70
  • 44.70
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.21
  • 44.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.43
  • 40.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.45
  • 39.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000062621 (SATB1)
HGNCHGNC:10541 (SATB1)
EMBLCABZ01059145, CABZ01059146, CABZ01059147, CABZ01059148, CABZ01059149, CABZ01059150, CABZ01059151, CABZ01059152, CABZ01059153
Uniprot/SPTREMBLA0A0G2KUW7, A0A0G2KUW7_DANRE, E7F7T8, E7F7T8_DANRE

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