Gene: nrxn3b - ENSDARG00000062693 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000062693
Name	nrxn3b
Description	neurexin 3b [Source:ZFIN;Acc:ZDB-GENE-070206-10]
Organism	Danio rerio (zebrafish)
Synonym(s)	nrxn3ba, nrxn3bb
Paralog(s)	4 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	526 526	98.24 98.24	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	6.60e3 6.60e3	77.89 77.89	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	6.69e3 6.69e3 1.25e4	77.59 77.59 58.20	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	7.76e3 7.76e3 1.04e4 1.63e4 2.03e4 2.11e4	74.03 74.03 65.03 45.51 32.01 29.38	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.31e4 1.31e4 1.78e4	56.01 56.01 40.24	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	44.16 44.16	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.67e4 1.67e4	43.95 43.95	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Deuterostomia	4 genes ENSDARG00000043746 nrxn3a ENSDARG00000061454 nrxn2a ENSDARG00000061647 nrxn1a ENSDARG00000063635 nrxn1b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000062693.

Cross-references

Ensembl	ENSDARG00000062693 (nrxn3b)
ZFIN	ZDB-GENE-070206-10 (nrxn3b)
EMBL	BX088548, CABZ01064277, CABZ01064278, CABZ01064279, CABZ01064280, CABZ01068890, CABZ01068891, CABZ01068892, CABZ01068893, CABZ01068894
Uniprot/SPTREMBL	A0A0H2UKU8, A0A0H2UKU8_DANRE, E7F8R2, E7F8R2_DANRE, F1QRL7, F1QRL7_DANRE, F1R5P7, F1R5P7_DANRE, F8W2B3, F8W2B3_DANRE