D. rerio Gene: pcdh1a - ENSDARG00000062720 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062720
Namepcdh1a
Descriptionprotocadherin 1a [Source:ZFIN;Acc:ZDB-GENE-091116-32]
OrganismDanio rerio (zebrafish)
Synonym(s)pcdh7, si:dkey-18f22.3
Orthologs(s)17 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.49e3
  • 1.49e3
95.00
  • 95.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
87.62
  • 87.62
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
  • 9.64e3
84.20
  • 84.20
  • 67.74
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000036Larval:Day 4
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
6.56e3
  • 6.56e3
  • 9.17e3
  • 1.47e4
  • 1.56e4
  • 1.67e4
78.02
  • 78.02
  • 69.30
  • 50.76
  • 47.87
  • 44.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.31e4
66.67
  • 66.67
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.02e4
  • 1.02e4
  • 1.51e4
65.77
  • 65.77
  • 49.29
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.37e4
62.50
  • 62.50
  • 54.15
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.42e4
57.14
  • 57.14
  • 52.60
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
  • 1.39e4
56.49
  • 56.49
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.48e4
  • 1.48e4
50.61
  • 50.61
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.50e4
  • 1.50e4
49.68
  • 49.68
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.26
  • 45.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.39
  • 44.39
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.04
  • 43.04
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.25
  • 41.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.43
  • 37.43
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.53
  • 32.53
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.26
  • 30.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.69
  • 28.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.24
  • 25.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Deuterostomia3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000062720.

Cross-references

EnsemblENSDARG00000062720 (pcdh1a)
ZFINZDB-GENE-091116-32 (pcdh1a)
EMBLBX004800, BX510911
Uniprot/SPTREMBLE7F743, E7F743_DANRE

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