D. rerio Gene: cep290 - ENSDARG00000062727 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062727
Namecep290
Descriptioncentrosomal protein 290 [Source:ZFIN;Acc:ZDB-GENE-041111-243]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7145703, im:7147820, nephrocystin-6, nphp6
Orthologs(s)17 orthologs
Paralog(s)50 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
  • 1.29e4
  • 1.30e4
  • 1.50e4
92.31
  • 92.31
  • 56.79
  • 56.49
  • 49.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 4.60e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.98e3
  • 6.22e3
  • 6.40e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.22e3
  • 8.30e3
85.71
  • 85.71
  • 85.71
  • 85.71
  • 84.61
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 79.99
  • 79.16
  • 78.57
  • 76.66
  • 76.46
  • 76.46
  • 76.18
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 72.48
  • 72.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.54e3
  • 5.54e3
81.45
  • 81.45
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
6.98e3
  • 6.98e3
  • 9.22e3
  • 1.12e4
  • 1.14e4
  • 1.49e4
76.62
  • 76.62
  • 69.11
  • 62.53
  • 61.68
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
7.03e3
  • 7.03e3
  • 1.44e4
  • 1.48e4
76.46
  • 76.46
  • 51.88
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.50e3
  • 7.50e3
74.89
  • 74.89
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
  • 1.49e4
74.88
  • 74.88
  • 50.26
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
8.11e3
  • 8.11e3
  • 8.60e3
72.85
  • 72.85
  • 71.20
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.55e3
  • 8.55e3
71.37
  • 71.37
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.66e3
  • 8.66e3
  • 1.16e4
71.01
  • 71.01
  • 60.99
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.76e3
  • 8.76e3
70.68
  • 70.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.67e3
  • 9.67e3
67.64
  • 67.64
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.00e4
  • 1.00e4
  • 1.19e4
66.40
  • 66.40
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0001846internal ear
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.55
  • 61.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.16e4
  • 1.16e4
  • 1.22e4
61.29
  • 61.29
  • 59.25
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.17e4
  • 1.17e4
  • 1.20e4
60.70
  • 60.70
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.54
  • 60.54
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.86
  • 59.86
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.81
  • 59.81
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
  • 1.38e4
58.72
  • 58.72
  • 53.70
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.37
  • 58.37
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.29
  • 57.29
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.26
  • 56.26
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.18
  • 56.18
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.59
  • 54.59
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.14
  • 53.14
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.92
  • 51.92
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.86
  • 48.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Cross-references

EnsemblENSDARG00000062727 (cep290)
ZFINZDB-GENE-041111-243 (cep290)
EMBLCR759966
Uniprot/SPTREMBLF1QRM4, F1QRM4_DANRE

Do not show this banner again