D. rerio Gene: foxe3 - ENSDARG00000062892 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062892
Namefoxe3
Descriptionforkhead box E3 [Source:ZFIN;Acc:ZDB-GENE-061214-6]
OrganismDanio rerio (zebrafish)
Orthologs(s)1 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003073lens placode
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
4.98e3
  • 4.98e3
  • 1.49e4
83.34
  • 83.34
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
5.23e3
  • 5.23e3
82.49
  • 82.49
AEIR
  • AEIR
UBERON:0001803epithelium of lens
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.60e3
  • 8.60e3
71.22
  • 71.22
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000029Pharyngula:Prim-5
9.19e3
  • 9.19e3
69.22
  • 69.22
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.15e4
  • 1.15e4
  • 1.26e4
  • 1.62e4
  • 1.95e4
  • 2.10e4
61.41
  • 61.41
  • 57.82
  • 45.79
  • 34.55
  • 29.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
1.16e4
  • 1.16e4
  • 1.33e4
  • 1.49e4
61.09
  • 61.09
  • 55.53
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.24e4
  • 1.24e4
  • 1.29e4
  • 1.34e4
58.33
  • 58.33
  • 56.65
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009122adenohypophyseal placode
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.96
  • 54.96
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.42e4
  • 1.42e4
  • 1.99e4
52.29
  • 52.29
  • 33.53
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.43
  • 51.43
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
  • 2.33e4
43.77
  • 43.77
  • 21.85
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.03
  • 34.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000062892.

Cross-references

EnsemblENSDARG00000062892 (foxe3)
ZFINZDB-GENE-061214-6 (foxe3)
EMBLBC163348, BC163364, FP016062
Uniprot/SPTREMBLB0UXI3, B0UXI3_DANRE

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