We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

D. rerio Gene: polr3b - ENSDARG00000062915 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062915
Namepolr3b
Descriptionpolymerase (RNA) III (DNA directed) polypeptide B [Source:ZFIN;Acc:ZDB-GENE-030131-2887]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-103i16.3, slim jim, slj, wu:fc20h06
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
88.16
  • 88.16
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.48e3
  • 4.48e3
84.99
  • 84.99
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.57e3
  • 4.57e3
84.70
  • 84.70
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
4.90e3
  • 4.90e3
  • 6.44e3
  • 6.85e3
  • 8.01e3
  • 8.43e3
  • 8.68e3
83.59
  • 83.59
  • 78.42
  • 77.05
  • 73.19
  • 71.78
  • 70.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.18e3
  • 5.18e3
82.66
  • 82.66
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.56e3
  • 5.56e3
81.38
  • 81.38
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
5.76e3
  • 5.76e3
  • 6.02e3
  • 6.20e3
  • 6.67e3
  • 6.78e3
  • 6.79e3
  • 7.66e3
  • 8.13e3
  • 8.80e3
  • 9.60e3
  • 1.02e4
  • 1.07e4
  • 1.08e4
  • 1.11e4
  • 1.13e4
80.72
  • 80.72
  • 79.84
  • 79.24
  • 77.68
  • 77.30
  • 77.27
  • 74.35
  • 72.78
  • 70.54
  • 67.84
  • 65.79
  • 64.08
  • 63.73
  • 62.69
  • 62.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.99e3
  • 5.99e3
  • 6.00e3
  • 6.63e3
  • 7.52e3
  • 8.11e3
  • 8.36e3
  • 9.05e3
  • 9.44e3
  • 1.02e4
  • 1.04e4
79.95
  • 79.95
  • 79.90
  • 77.79
  • 74.83
  • 72.84
  • 72.02
  • 69.69
  • 68.39
  • 65.82
  • 65.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.28e3
  • 6.28e3
78.97
  • 78.97
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.75e3
  • 6.75e3
77.40
  • 77.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.09e3
  • 7.09e3
  • 1.28e4
  • 1.35e4
76.26
  • 76.26
  • 57.13
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
  • 8.54e3
75.97
  • 75.97
  • 71.40
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.27e3
  • 7.27e3
75.65
  • 75.65
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.28e3
  • 7.28e3
  • 7.60e3
  • 9.25e3
  • 1.39e4
75.64
  • 75.64
  • 74.55
  • 69.01
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.98
  • 74.98
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.84e3
  • 7.84e3
73.75
  • 73.75
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.04e3
  • 8.04e3
73.07
  • 73.07
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
8.08e3
  • 8.08e3
  • 8.69e3
  • 8.81e3
  • 9.39e3
  • 1.03e4
72.96
  • 72.96
  • 70.91
  • 70.51
  • 68.56
  • 65.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
71.79
  • 71.79
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.72e3
  • 8.72e3
70.80
  • 70.80
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.74e3
  • 8.74e3
70.73
  • 70.73
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.84e3
  • 8.84e3
70.41
  • 70.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
8.95e3
  • 8.95e3
  • 1.19e4
  • 1.24e4
70.02
  • 70.02
  • 60.00
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
  • 9.97e3
68.76
  • 68.76
  • 66.62
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.44e3
  • 9.44e3
  • 1.01e4
  • 1.07e4
68.38
  • 68.38
  • 66.07
  • 64.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.90e3
  • 9.90e3
66.87
  • 66.87
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
  • 1.16e4
64.21
  • 64.21
  • 61.11
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
  • 1.20e4
63.28
  • 63.28
  • 59.73
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.54
  • 61.54
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.96
  • 60.96
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.63
  • 52.63
AEIR
  • AEIR
UBERON:0001016nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000062915.

Cross-references

EnsemblENSDARG00000062915 (polr3b)
ZFINZDB-GENE-030131-2887 (polr3b)
Uniprot/SPTREMBLF1QQA2, F1QQA2_DANRE

Do not show this banner again