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D. rerio Gene: ndnf - ENSDARG00000062936 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062936
Namendnf
Descriptionneuron-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-030131-207]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb16h09
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
  • 2.76e3
95.44
  • 95.44
  • 90.77
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.64e3
  • 1.64e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
2.15e3
  • 2.15e3
  • 3.00e3
  • 3.91e3
  • 4.19e3
  • 4.28e3
  • 4.66e3
  • 4.67e3
  • 4.80e3
  • 4.87e3
  • 5.12e3
92.82
  • 92.82
  • 89.96
  • 86.90
  • 85.97
  • 85.68
  • 84.41
  • 84.35
  • 83.94
  • 83.70
  • 82.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.28e3
  • 2.28e3
92.36
  • 92.36
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.64e3
  • 2.64e3
  • 3.01e3
  • 3.05e3
  • 3.55e3
  • 3.84e3
  • 3.92e3
  • 4.78e3
  • 4.83e3
  • 4.86e3
  • 5.72e3
  • 7.76e3
  • 8.47e3
  • 9.10e3
91.15
  • 91.15
  • 89.93
  • 89.79
  • 88.12
  • 87.13
  • 86.88
  • 84.00
  • 83.84
  • 83.72
  • 80.85
  • 74.03
  • 71.64
  • 69.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
  • 6.28e3
90.16
  • 90.16
  • 78.98
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.98e3
  • 2.98e3
  • 3.43e3
  • 3.49e3
90.04
  • 90.04
  • 88.52
  • 88.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.87e3
  • 3.87e3
87.03
  • 87.03
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.52e3
  • 4.52e3
  • 9.40e3
84.88
  • 84.88
  • 68.51
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
83.72
  • 83.72
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.26e3
  • 5.26e3
  • 1.04e4
82.38
  • 82.38
  • 65.22
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
5.80e3
  • 5.80e3
  • 1.37e4
80.57
  • 80.57
  • 54.13
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.98e3
  • 5.98e3
79.98
  • 79.98
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.74e3
  • 6.74e3
  • 7.90e3
  • 9.31e3
  • 1.06e4
77.42
  • 77.42
  • 73.56
  • 68.81
  • 64.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.05
  • 77.05
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
6.87e3
  • 6.87e3
  • 7.08e3
  • 7.13e3
  • 8.89e3
  • 8.90e3
  • 1.05e4
77.01
  • 77.01
  • 76.29
  • 76.12
  • 70.22
  • 70.20
  • 64.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.94
  • 71.94
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
1.08e4
  • 1.08e4
  • 1.39e4
  • 1.51e4
63.86
  • 63.86
  • 53.34
  • 49.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.55
  • 61.55
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.19e4
  • 1.19e4
60.06
  • 60.06
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
  • 1.39e4
56.23
  • 56.23
  • 53.55
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.87
  • 53.87
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.60
  • 53.60
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.13
  • 53.13
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.36
  • 52.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.86
  • 51.86
AEIR
  • AEIR
UBERON:0000930stomodeum
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.03
  • 47.03
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.94
  • 46.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.05
  • 46.05
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e4
  • 1.66e4
44.39
  • 44.39
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.49
  • 42.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.44
  • 41.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.24
  • 34.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000062936.

Cross-references

EnsemblENSDARG00000062936 (ndnf)
ZFINZDB-GENE-030131-207 (ndnf)
Uniprot/SPTREMBLF1QPX0, F1QPX0_DANRE

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