D. rerio Gene: iffo1a - ENSDARG00000062976 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000062976
Nameiffo1a
Descriptionintermediate filament family orphan 1a [Source:ZFIN;Acc:ZDB-GENE-060503-418]
OrganismDanio rerio (zebrafish)
Synonym(s)iffo, iffo1, si:ch211-288g17.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.45
  • 73.45
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.59e3
  • 8.59e3
71.25
  • 71.25
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.02e4
  • 1.02e4
65.94
  • 65.94
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.06e4
  • 1.06e4
  • 1.53e4
64.60
  • 64.60
  • 48.88
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.45
  • 64.45
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.78e4
62.47
  • 62.47
  • 40.28
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.29
  • 51.29
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.69e4
  • 1.69e4
  • 1.75e4
  • 2.13e4
43.52
  • 43.52
  • 41.32
  • 28.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.71
  • 42.71
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.27
  • 42.27
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.29
  • 37.29
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.92
  • 32.92
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.01e4
  • 2.01e4
  • 2.26e4
32.66
  • 32.66
  • 24.27
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.30
  • 25.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000062976 (iffo1a)
ZFINZDB-GENE-060503-418 (iffo1a)
EMBLBX005154, CR388038
Uniprot/SPTREMBLF1QFE6, F1QFE6_DANRE

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