Gene: fbxo18 - ENSDARG00000062983 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000062983
Name	fbxo18
Description	F-box protein, helicase, 18 [Source:ZFIN;Acc:ZDB-GENE-041210-99]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-22l11.2
Orthologs(s)	19 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	2.68e3 2.68e3 4.14e3	91.01 91.01 86.15	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	3.05e3 3.05e3 3.20e3	89.79 89.79 89.29	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	3.53e3 3.53e3	88.18 88.18	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	4.31e3 4.31e3	85.56 85.56	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	4.50e3 4.50e3	84.93 84.93	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	5.34e3 5.34e3	82.12 82.12	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	7.07e3 7.07e3	76.33 76.33	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	7.12e3 7.12e3	76.16 76.16	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.52e3 7.52e3	74.84 74.84	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	7.81e3 7.81e3 8.61e3	73.85 73.85 71.18	AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.89e3 7.89e3	73.58 73.58	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	7.91e3 7.91e3 8.05e3 8.14e3 9.98e3 1.13e4	73.53 73.53 73.04 72.74 66.57 62.11	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	8.32e3 8.32e3	72.14 72.14	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	8.69e3 8.69e3	70.89 70.89	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	8.71e3 8.71e3	70.82 70.82	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	9.06e3 9.06e3	69.65 69.65	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	9.38e3 9.38e3 1.11e4	68.59 68.59 62.98	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	9.44e3 9.44e3	68.39 68.39	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.02e4 1.02e4	65.92 65.92	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.02e4 1.02e4	65.85 65.85	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.05e4 1.05e4	64.79 64.79	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.07e4 1.07e4	64.15 64.15	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.14e4 1.14e4 1.34e4	61.73 61.73 55.19	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.42e4 1.42e4	52.50 52.50	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	19 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000134452 FBXO18 ENSMUSG00000058594 Fbxo18 ENSPTRG00000002261 FBXO18 ENSGGOG00000013326 FBXO18 ENSMMUG00000015143 ENSRNOG00000018549 Fbxo18 ENSBTAG00000004147 FBXO18 ENSSSCG00000030030 FBXO18 ENSECAG00000006839 FBXO18 ENSOCUG00000006237 FBXO18 ENSCAFG00000005218 FBXO18 ENSFCAG00000009004 FBXO18 ENSCPOG00000010580 FBXO18 ENSEEUG00000000461 FBXO18 ENSMODG00000018516 FBXO18 ENSOANG00000015459 FBXO18 ENSGALG00000008162 FBXO18 ENSACAG00000002729 FBXO18 ENSXETG00000018125 fbxo18	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000062983.

Cross-references

Ensembl	ENSDARG00000062983 (fbxo18)
ZFIN	ZDB-GENE-041210-99 (fbxo18)
EMBL	BX248111
Uniprot/SPTREMBL	E9QBZ9, E9QBZ9_DANRE, F6NLJ4, F6NLJ4_DANRE