D. rerio Gene: fam78ba - ENSDARG00000063018 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063018
Namefam78ba
Descriptionfamily with sequence similarity 78, member B a [Source:ZFIN;Acc:ZDB-GENE-140227-3]
OrganismDanio rerio (zebrafish)
Synonym(s)si:zfos-1453d3.1
Orthologs(s)19 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
8.19e3
  • 8.19e3
  • 8.22e3
  • 1.05e4
72.58
  • 72.58
  • 72.49
  • 64.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
  • 1.04e4
67.50
  • 67.50
  • 65.08
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.00e4
  • 1.00e4
  • 1.27e4
  • 1.71e4
66.53
  • 66.53
  • 57.46
  • 42.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.16e4
  • 1.16e4
  • 1.29e4
  • 1.43e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.90e4
  • 1.90e4
61.32
  • 61.32
  • 56.87
  • 52.25
  • 40.40
  • 40.30
  • 40.17
  • 36.35
  • 36.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.21e4
  • 1.21e4
  • 1.42e4
  • 1.53e4
  • 1.57e4
  • 1.58e4
  • 1.59e4
  • 1.63e4
59.51
  • 59.51
  • 52.55
  • 48.92
  • 47.27
  • 46.96
  • 46.90
  • 45.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 2.36e4
48.44
  • 48.44
  • 21.02
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.52
  • 25.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000063018.

Cross-references

EnsemblENSDARG00000063018 (fam78ba)
ZFINZDB-GENE-140227-3 (fam78ba)
EMBLFP102157
Uniprot/SPTREMBLE7EZK7, E7EZK7_DANRE

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