Gene: shank3b - ENSDARG00000063054 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000063054
Name	shank3b
Description	SH3 and multiple ankyrin repeat domains 3b [Source:ZFIN;Acc:ZDB-GENE-041210-74]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-153k10.1, zs3.1
Paralog(s)	50 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	2.40e3 2.40e3 3.57e3	91.96 91.96 88.03	AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	5.12e3 5.12e3	82.85 82.85	AEIR AEIR
UBERON:0000955	brain	[+] 5 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000035Larval:Protruding-mouth ZFS:0000031Pharyngula:Prim-25	5.27e3 5.27e3 1.22e4 1.34e4 1.36e4 1.79e4	82.35 82.35 59.08 54.99 54.53 40.00	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002082	cardiac ventricle	[+] 1 stage UBERON:0000066fully formed stage	5.27e3 5.27e3	82.35 82.35	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	5.45e3 5.45e3	81.74 81.74	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	7.12e3 7.12e3 1.07e4	76.18 76.18 64.09	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.91e3 7.91e3	73.53 73.53	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	7.98e3 7.98e3	73.27 73.27	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.04e4 1.04e4	65.25 65.25	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	1.06e4 1.06e4 1.45e4 1.45e4 1.49e4 1.53e4	64.34 64.34 51.50 51.40 49.96 48.87	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001890	forebrain	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth ZFS:0000029Pharyngula:Prim-5	1.10e4 1.10e4 1.49e4 1.49e4	63.32 63.32 49.99 49.97	AEIR AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.18e4 1.18e4	60.37 60.37	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.19e4 1.19e4	60.28 60.28	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.21e4 1.21e4	59.32 59.32	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.24e4 1.24e4	58.32 58.32	AEIR AEIR
UBERON:0001891	midbrain	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.29e4 1.29e4	56.65 56.65	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.43e4 1.43e4	52.13 52.13	AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000037Larval:Day 5 ZFS:0000035Larval:Protruding-mouth UBERON:0000069larval stage	1.49e4 1.49e4 1.57e4 1.63e4	50.25 50.25 47.43 45.40	AEIR AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.56e4 1.56e4	47.86 47.86	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.48 46.48	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.61e4 1.61e4	46.03 46.03	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.76e4 1.76e4	40.91 40.91	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Opisthokonta	50 genes ENSDARG00000000103 myh10 ENSDARG00000001014 myh9b ENSDARG00000002295 si:dkey-21p1.3 ENSDARG00000007751 lmnl3 ENSDARG00000009782 myh11a ENSDARG00000012073 kif15 ENSDARG00000013006 pibf1 ENSDARG00000013415 lmna ENSDARG00000017105 vaspb ENSDARG00000019231 spna2 ENSDARG00000026489 khsrp ENSDARG00000026569 pimr196 ENSDARG00000029248 fubp1 ENSDARG00000035427 surf6 ENSDARG00000035650 evla ENSDARG00000038917 rad50 ENSDARG00000039279 golga5 ENSDARG00000042141 myo6b ENSDARG00000044016 myo6a ENSDARG00000044299 lmnb1 ENSDARG00000051896 fbn2a ENSDARG00000060627 HIP1R (1 to many) ENSDARG00000060751 taok3a ENSDARG00000062532 fam21c ENSDARG00000062727 cep290 ENSDARG00000062972 hip1 ENSDARG00000063295 myh9a ENSDARG00000067859 scospondin ENSDARG00000069435 cfap58 ENSDARG00000069603 taok1a ENSDARG00000073732 myh14 ENSDARG00000074899 taok2a ENSDARG00000075090 CU467646.1 ENSDARG00000076476 zgc:173770 ENSDARG00000077928 ccdc173 ENSDARG00000079751 megf8 ENSDARG00000086896 FUBP3 ENSDARG00000094343 ZNF197 (1 to many) ENSDARG00000098237 fbn2b ENSDARG00000098304 TAOK1 (1 to many) ENSDARG00000098777 AIM1L ENSDARG00000099076 CU467646.3 ENSDARG00000099294 FKBP15 (1 to many) ENSDARG00000099690 vaspa ENSDARG00000099720 evlb ENSDARG00000100584 ccdc40 ENSDARG00000100620 taok2b ENSDARG00000100972 myh11b ENSDARG00000101624 lmnb2 ENSDARG00000102458 hip1rb	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000063054.

Cross-references

Ensembl	ENSDARG00000063054 (shank3b)
ZFIN	ZDB-GENE-041210-74 (shank3b)
EMBL	BX901962, CT573066
Uniprot/SPTREMBL	F1Q560, F1Q560_DANRE, F1R0Q7, F1R0Q7_DANRE, H0WEB5, H0WEB5_DANRE