D. rerio Gene: syne1b - ENSDARG00000063068 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063068
Namesyne1b
Descriptionspectrin repeat containing, nuclear envelope 1b [Source:ZFIN;Acc:ZDB-GENE-071218-4]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.48e3
  • 1.48e3
  • 1.35e4
95.06011
  • 95.06011
  • 54.63885
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.89e3
  • 1.89e3
  • 4.44e3
  • 5.07e3
  • 9.80e3
93.66618
  • 93.66618
  • 85.14305
  • 83.02481
  • 67.18535
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.63637
  • 92.63637
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.03e3
  • 4.03e3
  • 4.43e3
86.52272
  • 86.52272
  • 85.18233
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
84.68674
  • 84.68674
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
5.76e3
  • 5.76e3
  • 9.87e3
  • 1.13e4
  • 1.25e4
  • 1.25e4
  • 1.39e4
  • 1.46e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.51e4
80.71128
  • 80.71128
  • 66.93805
  • 62.03700
  • 58.11144
  • 58.06446
  • 53.37582
  • 51.20808
  • 50.73713
  • 50.45334
  • 49.91796
  • 49.81080
  • 49.76925
  • 49.65888
  • 49.56009
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
6.42e3
  • 6.42e3
  • 8.02e3
  • 8.10e3
  • 1.03e4
  • 1.25e4
  • 1.37e4
  • 1.50e4
  • 1.62e4
  • 1.78e4
78.51800
  • 78.51800
  • 73.15230
  • 72.87463
  • 65.35512
  • 58.17694
  • 54.02468
  • 49.75421
  • 45.67411
  • 40.40106
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.82e3
  • 6.82e3
  • 8.52e3
  • 8.97e3
77.17992
  • 77.17992
  • 71.45802
  • 69.95443
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.04722
  • 77.04722
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
76.83421
  • 76.83421
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.10e3
  • 7.10e3
76.22476
  • 76.22476
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.61e3
  • 7.61e3
74.53287
  • 74.53287
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.05e3
  • 8.05e3
  • 1.06e4
73.03891
  • 73.03891
  • 64.41057
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.46636
  • 71.46636
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.99e3
  • 8.99e3
69.89465
  • 69.89465
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.12e3
  • 9.12e3
69.47788
  • 69.47788
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.36483
  • 67.36483
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.84e3
  • 9.84e3
67.04115
  • 67.04115
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.11e4
66.65084
  • 66.65084
  • 62.70797
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.41252
  • 65.41252
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.54563
  • 62.54563
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.85922
  • 56.85922
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.34e4
  • 1.34e4
  • 1.68e4
  • 1.74e4
55.28289
  • 55.28289
  • 43.62037
  • 41.74514
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.29364
  • 53.29364
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.40e4
  • 1.40e4
  • 1.67e4
  • 1.72e4
  • 1.75e4
53.09503
  • 53.09503
  • 43.97817
  • 42.33101
  • 41.42327
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.47e4
  • 1.47e4
50.85430
  • 50.85430
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.15367
  • 47.15367
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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