D. rerio Gene: scube1 - ENSDARG00000063097 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063097
Namescube1
Descriptionsignal peptide, CUB domain, EGF-like 1 [Source:ZFIN;Acc:ZDB-GENE-050302-78]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7427863
Orthologs(s)16 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000106zygote stage
  • UBERON:00072368 cell stage
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
2.55e3
  • 2.55e3
  • 6.54e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.91e3
  • 8.96e3
  • 1.30e4
  • 1.50e4
91.46
  • 91.46
  • 78.12
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 73.52
  • 69.99
  • 56.38
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.64e3
  • 4.64e3
84.46
  • 84.46
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.75
  • 81.75
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
74.89
  • 74.89
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.27e3
  • 8.27e3
72.31
  • 72.31
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.15
  • 71.15
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
8.85e3
  • 8.85e3
  • 1.29e4
  • 1.47e4
  • 1.51e4
  • 1.70e4
70.37
  • 70.37
  • 56.70
  • 50.75
  • 49.58
  • 42.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • ZFS:0000014Blastula:Sphere
  • UBERON:00072368 cell stage
  • UBERON:0000106zygote stage
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.49e4
66.67
  • 66.67
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.09
  • 65.09
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
  • 1.34e4
  • 1.37e4
  • 1.39e4
62.50
  • 62.50
  • 54.97
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
1.19e4
  • 1.19e4
  • 1.34e4
  • 1.49e4
  • 1.49e4
60.10
  • 60.10
  • 54.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000021Gastrula:90%-epiboly
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.30e4
  • 1.30e4
56.49
  • 56.49
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.30e4
  • 1.30e4
  • 1.53e4
56.32
  • 56.32
  • 48.61
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
1.32e4
  • 1.32e4
55.97
  • 55.97
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.46
  • 52.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.47e4
  • 1.47e4
  • 1.62e4
50.80
  • 50.80
  • 45.87
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.20
  • 50.20
AEIR
  • AEIR
UBERON:0005725olfactory system
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003306floor plate of neural tube
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
49.97
  • 49.97
  • 49.97
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.54e4
  • 1.54e4
  • 1.64e4
48.44
  • 48.44
  • 45.16
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.34
  • 46.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.20
  • 45.20
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.68e4
  • 1.68e4
43.75
  • 43.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.97
  • 41.97
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.81e4
  • 1.81e4
  • 1.90e4
39.29
  • 39.29
  • 36.30
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.68
  • 38.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.15
  • 38.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000063097.

Cross-references

EnsemblENSDARG00000063097 (scube1)
ZFINZDB-GENE-050302-78 (scube1)

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