D. rerio Gene: tfam - ENSDARG00000063145 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063145
Nametfam
Descriptiontranscription factor A, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-061013-552]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153358
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.82e3
  • 1.82e3
93.90
  • 93.90
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.97e3
  • 1.97e3
  • 4.55e3
  • 1.42e4
  • 1.44e4
  • 1.49e4
93.41
  • 93.41
  • 84.76
  • 52.60
  • 51.90
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
2.05e3
  • 2.05e3
  • 2.96e3
  • 3.19e3
  • 3.70e3
  • 4.54e3
  • 4.75e3
  • 5.04e3
  • 6.09e3
  • 6.38e3
  • 1.03e4
93.14
  • 93.14
  • 90.08
  • 89.32
  • 87.61
  • 84.81
  • 84.09
  • 83.11
  • 79.62
  • 78.65
  • 65.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
  • 8.46e3
91.71
  • 91.71
  • 71.67
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.41e3
  • 3.41e3
  • 1.50e4
88.58
  • 88.58
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.75e3
  • 3.75e3
87.44
  • 87.44
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
3.76e3
  • 3.76e3
  • 5.45e3
  • 7.49e3
  • 7.79e3
  • 8.40e3
  • 1.12e4
87.41
  • 87.41
  • 81.76
  • 74.93
  • 73.91
  • 71.88
  • 62.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.10
  • 87.10
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
4.03e3
  • 4.03e3
  • 4.60e3
  • 4.72e3
  • 5.01e3
  • 5.43e3
  • 5.61e3
  • 5.71e3
  • 6.31e3
  • 6.35e3
  • 6.35e3
  • 6.69e3
  • 6.84e3
  • 7.04e3
  • 7.65e3
  • 1.16e4
  • 1.33e4
  • 1.45e4
  • 1.47e4
  • 1.49e4
86.49
  • 86.49
  • 84.60
  • 84.20
  • 83.23
  • 81.83
  • 81.22
  • 80.89
  • 78.88
  • 78.75
  • 78.74
  • 77.61
  • 77.09
  • 76.45
  • 74.40
  • 61.10
  • 55.46
  • 51.56
  • 50.90
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.22e3
  • 4.22e3
  • 5.73e3
  • 7.36e3
85.87
  • 85.87
  • 80.82
  • 75.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
4.22e3
  • 4.22e3
  • 7.33e3
  • 7.50e3
85.87
  • 85.87
  • 75.47
  • 74.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
4.36e3
  • 4.36e3
  • 4.78e3
  • 9.96e3
  • 1.19e4
  • 1.22e4
  • 1.34e4
  • 1.36e4
85.39
  • 85.39
  • 84.00
  • 66.67
  • 59.99
  • 59.08
  • 54.99
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.22
  • 85.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
84.99
  • 84.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.18
  • 84.18
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
5.01e3
  • 5.01e3
  • 6.72e3
  • 9.63e3
  • 9.97e3
  • 1.00e4
83.22
  • 83.22
  • 77.49
  • 67.75
  • 66.62
  • 66.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.13
  • 82.13
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.09
  • 82.09
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.66e3
  • 5.66e3
81.04
  • 81.04
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.44
  • 79.44
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.33
  • 79.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.82
  • 78.82
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.80e3
  • 6.80e3
77.23
  • 77.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
77.14
  • 77.14
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.34e4
  • 1.34e4
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 54.97
  • 54.97
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
74.79
  • 74.79
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.11e3
  • 8.11e3
72.86
  • 72.86
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.27e3
  • 8.27e3
  • 1.50e4
72.31
  • 72.31
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.50e3
  • 9.50e3
68.19
  • 68.19
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.63e3
  • 9.63e3
67.76
  • 67.76
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.08e4
  • 1.08e4
63.78
  • 63.78
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.09e4
  • 1.09e4
63.53
  • 63.53
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.46
  • 59.46
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
  • 1.58e4
51.67
  • 51.67
  • 47.02
AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063145.

Cross-references

EnsemblENSDARG00000063145 (tfam)
ZFINZDB-GENE-061013-552 (tfam)
EMBLCU326359
Uniprot/SPTREMBLF1QF85, F1QF85_DANRE

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