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D. rerio Gene: rc3h1b - ENSDARG00000063182 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063182
Namerc3h1b
Descriptionring finger and CCCH-type domains 1b [Source:ZFIN;Acc:ZDB-GENE-060503-79]
OrganismDanio rerio (zebrafish)
Synonym(s)e9qfg7, si:dkey-60b12.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
2.98e3
  • 2.98e3
  • 3.03e3
  • 3.05e3
  • 3.17e3
  • 4.12e3
  • 4.39e3
  • 4.65e3
  • 4.68e3
  • 4.72e3
  • 4.76e3
  • 5.54e3
  • 5.71e3
  • 5.72e3
  • 6.23e3
  • 1.50e4
90.01
  • 90.01
  • 89.84
  • 89.77
  • 89.38
  • 86.22
  • 85.32
  • 84.45
  • 84.33
  • 84.21
  • 84.05
  • 81.45
  • 80.88
  • 80.84
  • 79.14
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.01e3
  • 3.01e3
89.91
  • 89.91
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
3.42e3
  • 3.42e3
  • 3.76e3
  • 3.87e3
  • 4.48e3
  • 5.15e3
  • 5.89e3
88.54
  • 88.54
  • 87.42
  • 87.04
  • 85.01
  • 82.77
  • 80.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.82e3
  • 3.82e3
  • 4.60e3
  • 6.40e3
  • 6.58e3
87.21
  • 87.21
  • 84.61
  • 78.58
  • 77.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.88e3
  • 4.88e3
83.65
  • 83.65
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
4.95e3
  • 4.95e3
  • 5.20e3
  • 5.81e3
  • 8.30e3
  • 9.35e3
83.41
  • 83.41
  • 82.57
  • 80.55
  • 72.22
  • 68.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
4.96e3
  • 4.96e3
  • 5.03e3
  • 7.16e3
  • 7.49e3
  • 8.11e3
  • 8.11e3
  • 8.21e3
  • 8.50e3
  • 9.22e3
  • 9.44e3
83.38
  • 83.38
  • 83.16
  • 76.02
  • 74.92
  • 72.83
  • 72.83
  • 72.51
  • 71.54
  • 69.14
  • 68.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.04e3
  • 5.04e3
83.14
  • 83.14
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.30e3
  • 5.30e3
82.26
  • 82.26
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.31e3
  • 5.31e3
82.23
  • 82.23
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.77e3
  • 5.77e3
80.68
  • 80.68
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.23
  • 80.23
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
80.15
  • 80.15
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.93e3
  • 5.93e3
  • 6.05e3
80.15
  • 80.15
  • 79.73
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.41e3
  • 6.41e3
78.54
  • 78.54
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.75e3
  • 6.75e3
  • 7.72e3
77.39
  • 77.39
  • 74.16
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.19e3
  • 7.19e3
75.93
  • 75.93
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.73
  • 75.73
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.48e3
  • 7.48e3
  • 7.92e3
  • 9.15e3
74.97
  • 74.97
  • 73.47
  • 69.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.02e3
  • 8.02e3
  • 8.97e3
73.15
  • 73.15
  • 69.96
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.95
  • 71.95
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.67e3
  • 8.67e3
70.98
  • 70.98
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.39e3
  • 9.39e3
68.55
  • 68.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.43e3
  • 9.43e3
68.43
  • 68.43
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.43e3
  • 9.43e3
68.42
  • 68.42
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.55e3
  • 9.55e3
68.02
  • 68.02
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.76
  • 66.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.47
  • 66.47
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.68
  • 64.68
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.67
  • 64.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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