D. rerio Gene: rfx5 - ENSDARG00000063258 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063258
Namerfx5
Descriptionregulatory factor X, 5 [Source:ZFIN;Acc:ZDB-GENE-070717-3]
OrganismDanio rerio (zebrafish)
Synonym(s)f8w398, si:ch211-210h11.13

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.77e3
  • 5.77e3
80.67
  • 80.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.02e3
  • 8.02e3
73.13
  • 73.13
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
65.38
  • 65.38
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.24
  • 65.24
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
1.04e4
  • 1.04e4
  • 1.24e4
  • 1.26e4
  • 1.34e4
  • 1.36e4
65.23
  • 65.23
  • 58.41
  • 57.69
  • 55.27
  • 54.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.88
  • 64.88
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.61
  • 63.61
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
  • 1.70e4
62.85
  • 62.85
  • 42.99
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.12e4
  • 1.12e4
  • 1.16e4
62.67
  • 62.67
  • 61.32
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.78
  • 60.78
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.19e4
  • 1.19e4
  • 1.36e4
60.24
  • 60.24
  • 54.33
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.34
  • 59.34
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.05
  • 59.05
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.04
  • 59.04
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.81
  • 56.81
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.46e4
56.29
  • 56.29
  • 51.23
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.31e4
  • 1.31e4
  • 1.38e4
56.09
  • 56.09
  • 53.96
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.07
  • 56.07
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.75
  • 55.75
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.19
  • 53.19
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.82
  • 48.82
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.58e4
  • 1.58e4
46.95
  • 46.95
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.27
  • 43.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000063258 (rfx5)
ZFINZDB-GENE-070717-3 (rfx5)
EMBLBX927401
Uniprot/SPTREMBLF1Q5U1, F1Q5U1_DANRE

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