Gene: rfx5 - ENSDARG00000063258 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000063258
Name	rfx5
Description	regulatory factor X, 5 [Source:ZFIN;Acc:ZDB-GENE-070717-3]
Organism	Danio rerio (zebrafish)
Synonym(s)	f8w398, si:ch211-210h11.13

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	5.77e3 5.77e3	80.67 80.67	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	8.02e3 8.02e3	73.13 73.13	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.03e4 1.03e4	65.38 65.38	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.04e4 1.04e4	65.24 65.24	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 UBERON:0000068embryo stage	1.04e4 1.04e4 1.24e4 1.26e4 1.34e4 1.36e4	65.23 65.23 58.41 57.69 55.27 54.37	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.05e4 1.05e4	64.88 64.88	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.61 63.61	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.11e4 1.11e4 1.70e4	62.85 62.85 42.99	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	1.12e4 1.12e4 1.16e4	62.67 62.67 61.32	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.17e4 1.17e4	60.78 60.78	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	1.19e4 1.19e4 1.36e4	60.24 60.24 54.33	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.21e4 1.21e4	59.34 59.34	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.22e4 1.22e4	59.05 59.05	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.22e4 1.22e4	59.04 59.04	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.23e4 1.23e4	58.83 58.83	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.29e4 1.29e4	56.81 56.81	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.31e4 1.31e4 1.46e4	56.29 56.29 51.23	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.31e4 1.31e4 1.38e4	56.09 56.09 53.96	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.31e4 1.31e4	56.07 56.07	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.32e4 1.32e4	55.75 55.75	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.40e4 1.40e4	53.19 53.19	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.53e4 1.53e4	48.82 48.82	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.58e4 1.58e4	46.95 46.95	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.69e4 1.69e4	43.27 43.27	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Cross-references

Ensembl	ENSDARG00000063258 (rfx5)
ZFIN	ZDB-GENE-070717-3 (rfx5)
EMBL	BX927401
Uniprot/SPTREMBL	F1Q5U1, F1Q5U1_DANRE