D. rerio Gene: ssuh2rs1 - ENSDARG00000063292 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063292
Namessuh2rs1
Descriptionssu-2 homolog, related sequence 1 [Source:ZFIN;Acc:ZDB-GENE-060929-994]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fc17d03, zgc:153440
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
648
  • 648
  • 1.06e3
  • 1.12e3
  • 1.55e3
  • 1.66e3
  • 1.79e3
  • 2.07e3
  • 3.50e3
  • 4.67e3
  • 4.86e3
97.83
  • 97.83
  • 96.45
  • 96.24
  • 94.82
  • 94.44
  • 94.01
  • 93.07
  • 88.29
  • 84.38
  • 83.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
886
  • 886
  • 5.12e3
97.04
  • 97.04
  • 82.87
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.12e3
  • 1.12e3
  • 1.47e3
  • 1.55e3
96.26
  • 96.26
  • 95.09
  • 94.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
  • 1.44e4
93.57
  • 93.57
  • 51.62
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
2.02e3
  • 2.02e3
  • 7.60e3
  • 1.21e4
93.25
  • 93.25
  • 74.54
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
93.00
  • 93.00
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
  • 2.22e3
  • 2.32e3
  • 2.66e3
  • 2.71e3
  • 2.84e3
  • 3.98e3
  • 4.26e3
  • 4.67e3
  • 5.05e3
  • 5.29e3
  • 5.46e3
  • 6.85e3
  • 1.26e4
  • 1.45e4
  • 1.50e4
92.65
  • 92.65
  • 92.56
  • 92.24
  • 91.10
  • 90.93
  • 90.49
  • 86.68
  • 85.74
  • 84.36
  • 83.09
  • 82.28
  • 81.72
  • 77.05
  • 57.85
  • 51.42
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
  • 3.94e3
  • 4.73e3
  • 1.13e4
92.33
  • 92.33
  • 86.81
  • 84.15
  • 62.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.68
  • 91.68
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.59
  • 90.59
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.84e3
  • 2.84e3
90.50
  • 90.50
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
  • 1.03e4
89.26
  • 89.26
  • 65.45
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
3.46e3
  • 3.46e3
  • 6.53e3
  • 6.87e3
  • 8.01e3
  • 8.20e3
  • 1.13e4
88.43
  • 88.43
  • 78.14
  • 76.98
  • 73.19
  • 72.54
  • 62.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.46e3
  • 3.46e3
88.41
  • 88.41
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
87.84
  • 87.84
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.04e3
  • 4.04e3
86.47
  • 86.47
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.05e3
  • 4.05e3
86.43
  • 86.43
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.33
  • 86.33
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.75
  • 85.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.73
  • 85.73
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.54e3
  • 4.54e3
84.79
  • 84.79
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.87e3
  • 6.87e3
77.01
  • 77.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.79
  • 75.79
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.30e3
  • 7.30e3
75.56
  • 75.56
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.40e3
  • 7.40e3
75.21
  • 75.21
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.92e3
  • 7.92e3
73.49
  • 73.49
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.01e3
  • 8.01e3
73.19
  • 73.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.63
  • 72.63
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
9.62e3
  • 9.62e3
  • 9.78e3
  • 1.23e4
  • 1.24e4
  • 1.49e4
67.78
  • 67.78
  • 67.26
  • 58.82
  • 58.62
  • 50.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.18e4
  • 1.18e4
60.47
  • 60.47
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.30e4
  • 1.30e4
56.54
  • 56.54
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.71
  • 53.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata3 genesCompare expression
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000063292.

Cross-references

EnsemblENSDARG00000063292 (ssuh2rs1)
ZFINZDB-GENE-060929-994 (ssuh2rs1)
EMBLBX469901
Uniprot/SPTREMBLE9QH76, E9QH76_DANRE, E9QJK4, E9QJK4_DANRE, F1QCJ3, F1QCJ3_DANRE

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