D. rerio Gene: gfm1 - ENSDARG00000063624 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063624
Namegfm1
DescriptionG elongation factor, mitochondrial 1 [Source:ZFIN;Acc:ZDB-GENE-061013-79]
OrganismDanio rerio (zebrafish)
Synonym(s)efg1, fc96f12, wu:fc96f12, zgc:154041
Orthologs(s)25 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.39e3
  • 3.39e3
88.65
  • 88.65
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.42e3
  • 3.42e3
  • 5.19e3
  • 1.21e4
88.56
  • 88.56
  • 82.62
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.62e3
  • 3.62e3
87.87
  • 87.87
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.05e3
  • 4.05e3
  • 6.57e3
  • 8.34e3
86.46
  • 86.46
  • 77.99
  • 72.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.75
  • 85.75
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
83.31
  • 83.31
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
5.09e3
  • 5.09e3
  • 5.50e3
  • 6.10e3
  • 6.86e3
  • 7.24e3
  • 7.25e3
  • 7.32e3
  • 7.63e3
  • 7.67e3
  • 7.96e3
  • 8.10e3
  • 8.22e3
  • 8.23e3
  • 9.82e3
  • 1.49e4
  • 1.49e4
82.97
  • 82.97
  • 81.57
  • 79.59
  • 77.05
  • 75.75
  • 75.73
  • 75.48
  • 74.46
  • 74.31
  • 73.36
  • 72.87
  • 72.46
  • 72.46
  • 67.14
  • 50.25
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.25
  • 82.25
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
5.38e3
  • 5.38e3
  • 5.70e3
  • 6.45e3
  • 7.38e3
  • 7.98e3
  • 8.03e3
  • 8.93e3
  • 9.22e3
  • 9.69e3
  • 1.02e4
82.00
  • 82.00
  • 80.90
  • 78.39
  • 75.30
  • 73.28
  • 73.12
  • 70.11
  • 69.14
  • 67.56
  • 65.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.48e3
  • 5.48e3
81.64
  • 81.64
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.97e3
  • 5.97e3
80.02
  • 80.02
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.15e3
  • 6.15e3
79.41
  • 79.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
79.36
  • 79.36
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.17e3
  • 6.17e3
  • 6.21e3
  • 7.34e3
  • 7.41e3
  • 8.85e3
79.34
  • 79.34
  • 79.22
  • 75.44
  • 75.18
  • 70.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.18e3
  • 6.18e3
79.33
  • 79.33
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.54
  • 78.54
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.48e3
  • 6.48e3
78.29
  • 78.29
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.48
  • 77.48
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.10
  • 77.10
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
6.86e3
  • 6.86e3
  • 7.93e3
  • 8.24e3
  • 8.28e3
  • 8.58e3
  • 8.70e3
77.04
  • 77.04
  • 73.46
  • 72.40
  • 72.26
  • 71.26
  • 70.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
76.85
  • 76.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.98e3
  • 6.98e3
76.65
  • 76.65
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.63e3
  • 7.63e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
74.01
  • 74.01
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.12e3
  • 8.12e3
  • 1.06e4
72.80
  • 72.80
  • 64.67
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.13e3
  • 8.13e3
72.79
  • 72.79
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.27e3
  • 8.27e3
  • 1.15e4
72.31
  • 72.31
  • 61.50
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.63e3
  • 8.63e3
71.11
  • 71.11
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
8.73e3
  • 8.73e3
  • 9.74e3
  • 1.01e4
70.77
  • 70.77
  • 67.38
  • 66.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.09
  • 70.09
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.76e3
  • 9.76e3
67.33
  • 67.33
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
  • 1.04e4
66.55
  • 66.55
  • 65.05
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.49
  • 58.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063624.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Opisthokonta1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000063624.

Cross-references

EnsemblENSDARG00000063624 (gfm1)
ZFINZDB-GENE-061013-79 (gfm1)
EMBLBC124798
Uniprot/SWISSPROTEFGM_DANRE, Q08BB1

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