D. rerio Gene: nrxn1b - ENSDARG00000063635 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063635
Namenrxn1b
Descriptionneurexin 1b [Source:ZFIN;Acc:ZDB-GENE-070206-3]
OrganismDanio rerio (zebrafish)
Synonym(s)nrxn1ba, nrxn1bb
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.53e3
  • 2.53e3
91.53
  • 91.53
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
7.13e3
  • 7.13e3
  • 8.38e3
  • 1.08e4
  • 1.14e4
  • 1.23e4
  • 1.23e4
  • 1.25e4
  • 1.26e4
  • 1.32e4
  • 1.45e4
76.12
  • 76.12
  • 71.93
  • 63.88
  • 61.70
  • 58.80
  • 58.70
  • 58.03
  • 57.67
  • 55.81
  • 51.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.75e3
  • 8.75e3
  • 1.11e4
70.71
  • 70.71
  • 62.78
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.92e3
  • 8.92e3
  • 1.37e4
70.15
  • 70.15
  • 54.11
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.51e3
  • 9.51e3
68.17
  • 68.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.78
  • 65.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.12e4
  • 1.12e4
  • 1.50e4
62.50
  • 62.50
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
  • 1.39e4
62.22
  • 62.22
  • 53.34
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.48
  • 60.48
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.72e4
59.59
  • 59.59
  • 42.55
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.97
  • 56.97
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
  • 1.68e4
  • 2.08e4
  • 2.21e4
  • 2.23e4
55.60
  • 55.60
  • 43.65
  • 30.41
  • 26.16
  • 25.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.48
  • 54.48
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.50
  • 50.50
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.95
  • 49.95
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.65e4
  • 1.65e4
  • 2.03e4
44.62
  • 44.62
  • 31.88
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.05
  • 37.05
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.72
  • 26.72
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Deuterostomia4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000063635.

Cross-references

EnsemblENSDARG00000063635 (nrxn1b)
ZFINZDB-GENE-070206-3 (nrxn1b)
EMBLAL929536, CU462915
Uniprot/SPTREMBLF1R7M4, F1R7M4_DANRE, F8W597, F8W597_DANRE

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