D. rerio Gene: clp1 - ENSDARG00000063663 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063663
Nameclp1
Descriptioncleavage and polyadenylation factor I subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5306]
OrganismDanio rerio (zebrafish)
Synonym(s)fa28a12, wu:fa28a12
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
4.01e3
  • 4.01e3
  • 5.39e3
  • 1.26e4
  • 1.28e4
  • 1.74e4
86.58
  • 86.58
  • 81.96
  • 57.94
  • 57.18
  • 41.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.82e3
  • 4.82e3
  • 1.04e4
  • 1.68e4
  • 1.72e4
  • 1.75e4
83.87
  • 83.87
  • 65.16
  • 43.69
  • 42.33
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.36e3
  • 6.36e3
78.71
  • 78.71
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.89
  • 75.89
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.91
  • 73.91
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.87e3
  • 7.87e3
73.65
  • 73.65
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.00e3
  • 9.00e3
69.88
  • 69.88
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.71e3
  • 9.71e3
  • 1.07e4
  • 1.11e4
  • 1.61e4
  • 1.64e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
67.48
  • 67.48
  • 64.32
  • 62.71
  • 46.14
  • 45.21
  • 41.29
  • 40.40
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.33
  • 66.33
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
1.10e4
  • 1.10e4
  • 1.21e4
  • 1.39e4
  • 1.41e4
  • 1.48e4
  • 1.50e4
  • 1.51e4
  • 1.58e4
  • 1.62e4
  • 1.67e4
  • 1.68e4
  • 1.69e4
  • 1.70e4
  • 1.75e4
63.14
  • 63.14
  • 59.58
  • 53.39
  • 52.95
  • 50.37
  • 49.70
  • 49.44
  • 47.00
  • 45.71
  • 44.17
  • 43.65
  • 43.55
  • 43.24
  • 41.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.42
  • 61.42
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.20
  • 61.20
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.55
  • 60.55
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.24
  • 59.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.28
  • 58.28
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.28e4
58.03
  • 58.03
  • 57.27
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.85
  • 57.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.16
  • 57.16
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.80e4
56.73
  • 56.73
  • 39.63
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.12
  • 55.12
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.79
  • 54.79
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.35e4
  • 1.35e4
54.68
  • 54.68
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.36e4
  • 1.36e4
  • 1.37e4
  • 1.81e4
54.53
  • 54.53
  • 53.97
  • 39.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.41e4
  • 1.41e4
52.87
  • 52.87
AEIR
  • AEIR
CL:0000100motor neuron
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.61e4
  • 1.61e4
  • 1.86e4
  • 1.87e4
46.17
  • 46.17
  • 37.69
  • 37.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.65e4
  • 1.65e4
  • 1.74e4
44.78
  • 44.78
  • 41.66
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063663.

Cross-references

EnsemblENSDARG00000063663 (clp1)
ZFINZDB-GENE-030131-5306 (clp1)
EMBLCR855307
Uniprot/SWISSPROTCLP1_DANRE, E7F3I6

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