D. rerio Gene: clp1 - ENSDARG00000063663 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063663
Nameclp1
Descriptioncleavage and polyadenylation factor I subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5306]
OrganismDanio rerio (zebrafish)
Synonym(s)fa28a12, wu:fa28a12

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.67099
  • 73.67099
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.87e3
  • 7.87e3
73.40581
  • 73.40581
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.00e3
  • 9.00e3
69.59701
  • 69.59701
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.71e3
  • 9.71e3
  • 1.06e4
  • 1.07e4
  • 1.61e4
  • 1.64e4
  • 1.74e4
  • 1.77e4
  • 1.77e4
67.18098
  • 67.18098
  • 64.05126
  • 63.75374
  • 45.73255
  • 44.69961
  • 41.16749
  • 40.27188
  • 40.13929
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
1.09e4
  • 1.09e4
  • 1.20e4
  • 1.38e4
  • 1.40e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
  • 1.57e4
  • 1.61e4
  • 1.67e4
  • 1.67e4
  • 1.68e4
  • 1.74e4
63.05550
  • 63.05550
  • 59.49469
  • 53.29156
  • 52.84544
  • 50.26667
  • 49.59496
  • 49.33040
  • 46.88653
  • 45.59461
  • 43.52918
  • 43.42967
  • 43.11390
  • 41.11831
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
60.83349
  • 60.83349
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.17778
  • 60.17778
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
59.97499
  • 59.97499
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.25e4
  • 1.25e4
  • 1.27e4
  • 1.73e4
57.85318
  • 57.85318
  • 57.08884
  • 41.61885
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
57.80275
  • 57.80275
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
56.76068
  • 56.76068
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.80e4
56.33092
  • 56.33092
  • 39.06680
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.69893
  • 54.69893
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.34e4
  • 1.34e4
54.58111
  • 54.58111
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.35e4
  • 1.35e4
  • 1.65e4
  • 1.79e4
54.53193
  • 54.53193
  • 44.36114
  • 39.41560
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.36770
  • 54.36770
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.10069
  • 54.10069
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.40e4
  • 1.40e4
52.76551
  • 52.76551
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.41051
  • 51.41051
AEIR
  • AEIR
CL:0000100motor neuron
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
49.90621
  • 49.90621
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.47696
  • 49.47696
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.14710
  • 47.14710
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.64e4
  • 1.64e4
  • 1.73e4
44.66422
  • 44.66422
  • 41.53333
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.67e4
  • 1.67e4
  • 1.71e4
  • 1.74e4
43.57116
  • 43.57116
  • 42.20601
  • 41.29630
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.83e4
  • 1.83e4
  • 1.85e4
  • 1.87e4
38.13050
  • 38.13050
  • 37.55486
  • 36.72205
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCR855307
EnsemblENSDARG00000063663 (clp1)
Uniprot/SWISSPROTCLP1_DANRE, E7F3I6
ZFINZDB-GENE-030131-5306 (clp1)

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