D. rerio Gene: gtf2a1l - ENSDARG00000063670 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063670
Namegtf2a1l
Descriptiongeneral transcription factor IIA, 1-like [Source:ZFIN;Acc:ZDB-GENE-060929-28]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:154100
Orthologs(s)9 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
3.68e3
  • 3.68e3
  • 5.18e3
87.67
  • 87.67
  • 82.65
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.96e3
  • 3.96e3
86.76
  • 86.76
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
4.16e3
  • 4.16e3
  • 5.69e3
86.07
  • 86.07
  • 80.94
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.45
  • 85.45
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.97e3
  • 5.97e3
80.01
  • 80.01
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.22
  • 79.22
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.82
  • 73.82
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.82
  • 73.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.49e3
  • 8.49e3
71.59
  • 71.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.30e3
  • 9.30e3
68.85
  • 68.85
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.16
  • 67.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
  • 1.10e4
66.61
  • 66.61
  • 63.19
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.76
  • 65.76
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.83
  • 63.83
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.56e4
62.51
  • 62.51
  • 47.80
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
61.20
  • 61.20
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.09
  • 61.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.88
  • 60.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.12
  • 54.12
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.40
  • 49.40
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.23
  • 49.23
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
1.52e4
  • 1.52e4
  • 1.55e4
  • 1.62e4
  • 1.70e4
  • 2.04e4
48.99
  • 48.99
  • 47.97
  • 45.92
  • 43.12
  • 31.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.17
  • 47.17
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.65e4
  • 1.65e4
  • 1.66e4
44.60
  • 44.60
  • 44.30
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.42
  • 44.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000063670 (gtf2a1l)
ZFINZDB-GENE-060929-28 (gtf2a1l)
EMBLBC124541, BC164474, FP102515
Uniprot/SPTREMBLQ08BV4, Q08BV4_DANRE

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