D. rerio Gene: vps72 - ENSDARG00000063718 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063718
Namevps72
Descriptionvacuolar protein sorting 72 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060503-88]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkeyp-24a7.1
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.65
  • 93.65
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
2.15e3
  • 2.15e3
  • 2.42e3
92.80
  • 92.80
  • 91.91
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
2.20e3
  • 2.20e3
  • 2.62e3
92.63
  • 92.63
  • 91.23
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.28e3
  • 2.28e3
92.38
  • 92.38
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.08e3
  • 4.08e3
86.36
  • 86.36
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.31e3
  • 4.31e3
  • 7.44e3
85.57
  • 85.57
  • 75.08
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.71e3
  • 4.71e3
  • 4.72e3
  • 5.08e3
  • 6.06e3
  • 9.94e3
84.22
  • 84.22
  • 84.21
  • 82.99
  • 79.72
  • 66.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.40e3
  • 6.40e3
  • 1.43e4
78.58
  • 78.58
  • 52.28
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.86
  • 77.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.02e3
  • 7.02e3
76.51
  • 76.51
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.33e3
  • 7.33e3
75.45
  • 75.45
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
74.65
  • 74.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.60e3
  • 7.60e3
74.56
  • 74.56
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.33e3
  • 8.33e3
72.12
  • 72.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.96
  • 71.96
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
71.64
  • 71.64
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.47e3
  • 8.47e3
71.64
  • 71.64
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
  • 9.31e3
70.25
  • 70.25
  • 68.81
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.14e3
  • 9.14e3
69.39
  • 69.39
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.23
  • 69.23
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.07
  • 65.07
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.76
  • 64.76
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.98
  • 62.98
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.17e4
  • 1.17e4
60.77
  • 60.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species16 genesCompare expression
Bilateria21 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063718.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000063718.

Cross-references

EnsemblENSDARG00000063718 (vps72)
ZFINZDB-GENE-060503-88 (vps72)
EMBLCR548627
Uniprot/SPTREMBLQ1L8X4, Q1L8X4_DANRE

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