Gene: pde11a - ENSDARG00000063732 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000063732
Name	pde11a
Description	phosphodiesterase 11a [Source:ZFIN;Acc:ZDB-GENE-070912-207]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:ch211-222f23.5
Orthologs(s)	17 orthologs
Paralog(s)	3 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.59e4 1.59e4	46.64 46.64	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5	1.60e4 1.60e4 1.86e4 1.90e4 1.95e4 2.05e4	46.58 46.58 37.75 36.39 34.74 31.51	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.75e4 1.75e4	41.50 41.50	AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.90e4 1.90e4 2.06e4	36.32 36.32 30.97	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.05e4 2.05e4	31.24 31.24	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	2.08e4 2.08e4 2.24e4	30.39 30.39 24.86	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	17 genes ENSG00000128655 PDE11A ENSMUSG00000075270 Pde11a ENSPTRG00000012684 PDE11A ENSGGOG00000034968 PDE11A ENSMMUG00000002011 PDE11A ENSRNOG00000024457 Cyct ENSBTAG00000016396 PDE11A ENSECAG00000004445 PDE11A ENSOCUG00000008038 PDE11A ENSCAFG00000013607 PDE11A ENSFCAG00000022207 PDE11A ENSCPOG00000000682 PDE11A ENSEEUG00000011839 PDE11A ENSOANG00000008626 PDE11A ENSGALG00000009215 PDE11A ENSACAG00000012077 PDE11A ENSXETG00000008465 pde11a	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000063732.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Vertebrata	1 gene ENSDARG00000006151 pde11al	Compare expression	[+]
Eukaryota	3 genes ENSDARG00000006151 pde11al ENSDARG00000011671 pde6b ENSDARG00000051915 pde5ab	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000063732.

Cross-references

Ensembl	ENSDARG00000063732 (pde11a)
ZFIN	ZDB-GENE-070912-207 (pde11a)
EMBL	BX004991
Uniprot/SPTREMBL	F1Q4Q7, F1Q4Q7_DANRE, F1R9A0, F1R9A0_DANRE