D. rerio Gene: mt-nd1 - ENSDARG00000063895 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063895
Namemt-nd1
DescriptionNADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
OrganismDanio rerio (zebrafish)
Synonym(s)mtnd1, nd1
Orthologs(s)19 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
10.7
  • 10.7
  • 5.40e3
99.97
  • 99.97
  • 81.93
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
15.0
  • 15.0
99.95
  • 99.95
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
17.5
  • 17.5
  • 37.5
99.94
  • 99.94
  • 99.88
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
24.8
  • 24.8
  • 4.76e3
99.92
  • 99.92
  • 84.07
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
27.0
  • 27.0
99.91
  • 99.91
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
31.0
  • 31.0
99.90
  • 99.90
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
31.7
  • 31.7
99.90
  • 99.90
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
32.0
  • 32.0
  • 32.7
  • 5.17e3
99.90
  • 99.90
  • 99.89
  • 82.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
35.0
  • 35.0
99.89
  • 99.89
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
35.3
  • 35.3
  • 55.0
99.89
  • 99.89
  • 99.82
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
38.0
  • 38.0
99.88
  • 99.88
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
41.3
  • 41.3
  • 47.6
  • 89.5
  • 94.3
  • 147
99.86
  • 99.86
  • 99.84
  • 99.70
  • 99.69
  • 99.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
48.3
  • 48.3
99.84
  • 99.84
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
48.7
  • 48.7
99.84
  • 99.84
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
52.0
  • 52.0
99.83
  • 99.83
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
64.0
  • 64.0
99.79
  • 99.79
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
72.5
  • 72.5
  • 84.0
99.76
  • 99.76
  • 99.72
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
77.0
  • 77.0
99.75
  • 99.75
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
82.4
  • 82.4
99.73
  • 99.73
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
96.0
  • 96.0
  • 215
99.68
  • 99.68
  • 99.28
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
109
  • 109
99.64
  • 99.64
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
113
  • 113
99.62
  • 99.62
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
117
  • 117
99.61
  • 99.61
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
132
  • 132
99.56
  • 99.56
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
190
  • 190
99.37
  • 99.37
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
7.65e3
  • 7.65e3
  • 1.14e4
  • 1.16e4
  • 1.28e4
  • 1.29e4
  • 1.38e4
  • 1.40e4
74.37
  • 74.37
  • 61.70
  • 61.22
  • 57.08
  • 56.79
  • 53.74
  • 53.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
9.88e3
  • 9.88e3
66.93
  • 66.93
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.24e4
  • 1.24e4
58.46
  • 58.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria18 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063895.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000063895.

Cross-references

EnsemblENSDARG00000063895 (mt-nd1)
ZFINZDB-GENE-011205-7 (mt-nd1)
EMBLAC024175
Uniprot/SWISSPROTNU1M_DANRE, Q9MIZ0

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