D. rerio Gene: mt-nd2 - ENSDARG00000063899 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063899
Namemt-nd2
DescriptionNADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
OrganismDanio rerio (zebrafish)
Synonym(s)cb950, mtnd2, nd2
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
10.5
  • 10.5
99.97
  • 99.97
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
12.0
  • 12.0
  • 27.0
99.96
  • 99.96
  • 99.91
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
12.5
  • 12.5
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
25.0
  • 25.0
99.92
  • 99.92
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
30.4
  • 30.4
  • 69.2
99.90
  • 99.90
  • 99.77
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
40.0
  • 40.0
99.87
  • 99.87
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
41.0
  • 41.0
99.87
  • 99.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
41.1
  • 41.1
99.87
  • 99.87
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
45.0
  • 45.0
  • 77.5
  • 116
  • 141
  • 187
99.85
  • 99.85
  • 99.74
  • 99.62
  • 99.53
  • 99.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
45.4
  • 45.4
  • 1.21e4
  • 1.23e4
99.85
  • 99.85
  • 59.50
  • 58.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
47.8
  • 47.8
  • 70.0
99.84
  • 99.84
  • 99.77
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
49.0
  • 49.0
99.84
  • 99.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
52.1
  • 52.1
99.83
  • 99.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
60.6
  • 60.6
  • 1.31e4
  • 1.35e4
99.80
  • 99.80
  • 56.23
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
77.0
  • 77.0
99.75
  • 99.75
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
77.5
  • 77.5
  • 217
99.74
  • 99.74
  • 99.28
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
82.0
  • 82.0
99.73
  • 99.73
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
88.5
  • 88.5
  • 105
99.71
  • 99.71
  • 99.65
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
111
  • 111
99.63
  • 99.63
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
122
  • 122
99.59
  • 99.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
125
  • 125
99.59
  • 99.59
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
171
  • 171
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
213
  • 213
99.29
  • 99.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
272
  • 272
99.09
  • 99.09
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
380
  • 380
98.73
  • 98.73
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.31e4
  • 1.31e4
  • 1.39e4
56.23
  • 56.23
  • 53.55
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria18 species18 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063899.

Cross-references

EnsemblENSDARG00000063899 (mt-nd2)
ZFINZDB-GENE-011205-8 (mt-nd2)
EMBLAC024175, KM244705
Uniprot/SPTREMBLA0A0A0V9A1, A0A0A0V9A1_DANRE
Uniprot/SWISSPROTNU2M_DANRE, Q9MIY9

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