D. rerio Gene: mt-co1 - ENSDARG00000063905 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063905
Namemt-co1
Descriptioncytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
OrganismDanio rerio (zebrafish)
Synonym(s)coi, cox1, coxi, mtco1, q52ni8
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.00
  • 1.00
100.00
  • 100.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.00
  • 2.00
100.00
  • 100.00
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.00
  • 2.00
100.00
  • 100.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
2.16
  • 2.16
  • 2.16
  • 3.00
  • 4.00
  • 4.33
100.00
  • 100.00
  • 100.00
  • 99.99
  • 99.99
  • 99.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • ZFS:0000035Larval:Protruding-mouth
2.16
  • 2.16
  • 5.39
  • 10.8
  • 11.8
  • 12.9
  • 12.9
  • 13.5
  • 14.0
  • 15.2
  • 22.6
  • 23.6
  • 47.2
  • 50.0
  • 89.3
  • 484
  • 652
  • 2.13e3
  • 2.35e3
  • 6.07e3
  • 1.08e4
100.00
  • 100.00
  • 99.99
  • 99.97
  • 99.96
  • 99.96
  • 99.96
  • 99.96
  • 99.96
  • 99.95
  • 99.93
  • 99.92
  • 99.85
  • 99.84
  • 99.70
  • 98.38
  • 97.82
  • 92.86
  • 92.15
  • 79.67
  • 63.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.16
  • 2.16
100.00
  • 100.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.16
  • 2.16
  • 4.77
  • 5.39
  • 11.0
  • 12.9
  • 15.8
100.00
  • 100.00
  • 99.99
  • 99.99
  • 99.97
  • 99.96
  • 99.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.76
  • 2.76
  • 19.9
  • 415
99.99
  • 99.99
  • 99.94
  • 98.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.00
  • 3.00
  • 5.00
99.99
  • 99.99
  • 99.99
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.57
  • 3.57
99.99
  • 99.99
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.48
  • 4.48
99.99
  • 99.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.52
  • 4.52
  • 1.50e4
99.99
  • 99.99
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
4.67
  • 4.67
  • 6.48
  • 7.91
  • 7.99
  • 9.33
  • 12.9
  • 17.2
  • 17.9
  • 48.0
  • 135
99.99
  • 99.99
  • 99.98
  • 99.98
  • 99.98
  • 99.97
  • 99.96
  • 99.95
  • 99.94
  • 99.84
  • 99.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.13
  • 5.13
99.99
  • 99.99
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
5.71
  • 5.71
  • 15.0
  • 1.15e3
99.98
  • 99.98
  • 99.95
  • 96.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.83
  • 6.83
  • 13.0
  • 16.5
  • 17.8
99.98
  • 99.98
  • 99.96
  • 99.95
  • 99.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.18
  • 7.18
  • 32.5
99.98
  • 99.98
  • 99.89
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.53
  • 7.53
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.83
  • 7.83
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.98
  • 7.98
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.00
  • 8.00
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.00
  • 8.00
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.58
  • 8.58
99.97
  • 99.97
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.62
  • 8.62
99.97
  • 99.97
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.63
  • 8.63
  • 9.00
  • 10.8
99.97
  • 99.97
  • 99.97
  • 99.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.00
  • 9.00
99.97
  • 99.97
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
11.1
  • 11.1
99.97
  • 99.97
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
11.5
  • 11.5
99.96
  • 99.96
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
13.0
  • 13.0
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
13.0
  • 13.0
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
15.1
  • 15.1
99.95
  • 99.95
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
17.0
  • 17.0
99.95
  • 99.95
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
23.0
  • 23.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
5.51e3
  • 5.51e3
81.54
  • 81.54
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
8.18e3
  • 8.18e3
72.60
  • 72.60
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.27e4
  • 1.27e4
57.33
  • 57.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria19 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063905.

Cross-references

EnsemblENSDARG00000063905 (mt-co1)
ZFINZDB-GENE-011205-14 (mt-co1)
EMBLAC024175, AY996924, KM244705
Uniprot/SPTREMBLA0A0A0VG02, A0A0A0VG02_DANRE
Uniprot/SWISSPROTCOX1_DANRE, Q9MIY8

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