D. rerio Gene: mt-nd4 - ENSDARG00000063917 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063917
Namemt-nd4
DescriptionNADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
OrganismDanio rerio (zebrafish)
Synonym(s)mtnd4, nd4
Orthologs(s)17 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
11.9
  • 11.9
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
20.0
  • 20.0
  • 45.0
99.94
  • 99.94
  • 99.85
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
22.0
  • 22.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
24.3
  • 24.3
99.92
  • 99.92
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
24.8
  • 24.8
  • 40.0
99.92
  • 99.92
  • 99.87
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
25.6
  • 25.6
99.92
  • 99.92
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
29.0
  • 29.0
99.91
  • 99.91
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
38.0
  • 38.0
99.88
  • 99.88
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
40.0
  • 40.0
99.87
  • 99.87
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
44.3
  • 44.3
99.85
  • 99.85
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
51.0
  • 51.0
  • 54.9
99.83
  • 99.83
  • 99.82
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
51.3
  • 51.3
  • 80.1
  • 139
  • 150
  • 204
99.83
  • 99.83
  • 99.74
  • 99.54
  • 99.50
  • 99.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
54.3
  • 54.3
99.82
  • 99.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
55.2
  • 55.2
99.82
  • 99.82
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
60.7
  • 60.7
99.80
  • 99.80
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
72.0
  • 72.0
99.76
  • 99.76
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
79.0
  • 79.0
99.74
  • 99.74
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
80.9
  • 80.9
99.73
  • 99.73
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
93.0
  • 93.0
99.69
  • 99.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
106
  • 106
99.65
  • 99.65
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
125
  • 125
  • 135
99.58
  • 99.58
  • 99.55
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
128
  • 128
99.57
  • 99.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
130
  • 130
  • 246
99.57
  • 99.57
  • 99.18
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
193
  • 193
99.36
  • 99.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
232
  • 232
99.23
  • 99.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000063917.

Cross-references

EnsemblENSDARG00000063917 (mt-nd4)
ZFINZDB-GENE-011205-10 (mt-nd4)
EMBLAC024175
Uniprot/SWISSPROTNU4M_DANRE, Q9MIY1

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