D. rerio Gene: mt-cyb - ENSDARG00000063924 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000063924
Namemt-cyb
Descriptioncytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
OrganismDanio rerio (zebrafish)
Synonym(s)cob, cytb, mtcyb, q9ta52
Orthologs(s)19 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.00
  • 6.00
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.92
  • 6.92
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.00
  • 8.00
  • 10.0
99.98
  • 99.98
  • 99.97
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.00
  • 8.00
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.00
  • 9.00
99.97
  • 99.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
10.0
  • 10.0
99.97
  • 99.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
12.6
  • 12.6
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
13.1
  • 13.1
  • 18.0
99.96
  • 99.96
  • 99.94
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
14.5
  • 14.5
  • 29.5
99.95
  • 99.95
  • 99.90
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
15.0
  • 15.0
  • 25.4
99.95
  • 99.95
  • 99.92
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
15.5
  • 15.5
  • 24.0
99.95
  • 99.95
  • 99.92
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
18.3
  • 18.3
99.94
  • 99.94
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
19.3
  • 19.3
  • 27.6
  • 28.7
  • 60.0
  • 137
99.94
  • 99.94
  • 99.91
  • 99.91
  • 99.80
  • 99.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
21.0
  • 21.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
23.0
  • 23.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
24.0
  • 24.0
99.92
  • 99.92
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
25.3
  • 25.3
99.92
  • 99.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
26.0
  • 26.0
99.92
  • 99.92
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
26.2
  • 26.2
99.92
  • 99.92
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
28.0
  • 28.0
99.91
  • 99.91
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
34.0
  • 34.0
99.89
  • 99.89
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
38.0
  • 38.0
99.88
  • 99.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
38.5
  • 38.5
99.87
  • 99.87
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
69.0
  • 69.0
99.77
  • 99.77
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
141
  • 141
99.53
  • 99.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria19 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000063924.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000063924.

Cross-references

EnsemblENSDARG00000063924 (mt-cyb)
ZFINZDB-GENE-011205-17 (mt-cyb)
EMBLAC024175, AJ388456, KM244705
Uniprot/SPTREMBLA0A0A0VDB5, A0A0A0VDB5_DANRE
Uniprot/SWISSPROTCYB_DANRE, Q9MIX8

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