D. rerio Gene: rsph4a - ENSDARG00000067606 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000067606
Namersph4a
Descriptionradial spoke head 4 homolog A (Chlamydomonas) [Source:ZFIN;Acc:ZDB-GENE-030131-7437]
OrganismDanio rerio (zebrafish)
Synonym(s)rshl3, wu:fj17d05
Orthologs(s)33 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
384
  • 384
98.72
  • 98.72
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.62
  • 63.62
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.17e4
  • 1.17e4
60.92
  • 60.92
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.22e4
  • 1.22e4
59.17
  • 59.17
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.26e4
  • 1.26e4
  • 1.34e4
  • 1.38e4
  • 1.41e4
  • 1.41e4
  • 1.43e4
  • 1.47e4
  • 1.61e4
  • 1.96e4
57.85
  • 57.85
  • 55.16
  • 53.83
  • 52.84
  • 52.68
  • 51.99
  • 50.89
  • 45.93
  • 34.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
56.78
  • 56.78
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.42e4
  • 1.42e4
  • 1.75e4
52.54
  • 52.54
  • 41.42
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.66
  • 50.66
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.72
  • 48.72
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.87
  • 47.87
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
  • 1.83e4
47.77
  • 47.77
  • 38.79
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.55
  • 46.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.64
  • 45.64
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.62e4
  • 1.62e4
  • 1.77e4
45.59
  • 45.59
  • 40.70
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.50
  • 45.50
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.63e4
  • 1.63e4
  • 1.66e4
  • 1.69e4
45.48
  • 45.48
  • 44.40
  • 43.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.41
  • 42.41
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.73e4
  • 1.73e4
41.98
  • 41.98
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.28
  • 41.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.53
  • 34.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.09
  • 34.09
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.71
  • 33.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species28 genesCompare expression
Bilateria23 species33 genesCompare expression

Orthology information comes from OMA : ENSDARG00000067606.

Cross-references

EnsemblENSDARG00000067606 (rsph4a)
ZFINZDB-GENE-030131-7437 (rsph4a)
EMBLCR759879
Uniprot/SPTREMBLA2CET1, A2CET1_DANRE

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