D. rerio Gene: sh3gl1a - ENSDARG00000067958 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000067958
Namesh3gl1a
DescriptionSH3-domain GRB2-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4524]
OrganismDanio rerio (zebrafish)
Synonym(s)ch211-281o21.2, eenb, sh3gl1b, wu:fd12b05, wu:fy33c10, zgc:56637
Orthologs(s)7 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.94
  • 92.94
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:00072322 cell stage
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
2.49e3
  • 2.49e3
  • 6.53e3
  • 6.79e3
  • 6.87e3
  • 7.23e3
  • 7.33e3
  • 7.36e3
  • 8.90e3
  • 8.93e3
  • 8.96e3
  • 1.01e4
  • 1.09e4
  • 1.14e4
  • 1.27e4
  • 1.32e4
  • 1.33e4
  • 1.48e4
91.67
  • 91.67
  • 78.13
  • 77.27
  • 77.01
  • 75.78
  • 75.47
  • 75.36
  • 70.22
  • 70.09
  • 69.99
  • 66.13
  • 63.53
  • 61.84
  • 57.60
  • 55.85
  • 55.55
  • 50.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.49e3
  • 2.49e3
  • 3.49e3
  • 3.73e3
  • 4.25e3
  • 5.56e3
91.65
  • 91.65
  • 88.30
  • 87.53
  • 85.79
  • 81.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.01e3
  • 3.01e3
89.92
  • 89.92
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.20e3
  • 3.20e3
89.29
  • 89.29
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.59e3
  • 3.59e3
87.97
  • 87.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.72
  • 86.72
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
84.96
  • 84.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
4.56e3
  • 4.56e3
  • 7.26e3
  • 7.31e3
  • 7.91e3
  • 9.39e3
  • 9.40e3
84.72
  • 84.72
  • 75.70
  • 75.51
  • 73.50
  • 68.55
  • 68.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.66e3
  • 4.66e3
  • 5.33e3
84.40
  • 84.40
  • 82.17
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.97e3
  • 4.97e3
83.35
  • 83.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.33e3
  • 5.33e3
82.15
  • 82.15
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
80.95
  • 80.95
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.82e3
  • 5.82e3
80.51
  • 80.51
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.97e3
  • 5.97e3
  • 1.12e4
  • 1.16e4
80.00
  • 80.00
  • 62.48
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000037Larval:Day 5
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
6.29e3
  • 6.29e3
  • 6.40e3
  • 6.49e3
  • 6.81e3
  • 9.10e3
  • 9.19e3
  • 9.29e3
  • 9.34e3
  • 1.01e4
  • 1.23e4
78.94
  • 78.94
  • 78.57
  • 78.28
  • 77.20
  • 69.53
  • 69.23
  • 68.88
  • 68.72
  • 66.23
  • 58.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.87
  • 78.87
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.72e3
  • 6.72e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.16e3
  • 8.16e3
  • 9.73e3
  • 1.21e4
72.69
  • 72.69
  • 67.41
  • 59.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 1.21e4
  • 1.29e4
  • 1.29e4
  • 1.32e4
  • 1.33e4
  • 1.39e4
  • 1.39e4
71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 71.43
  • 59.36
  • 56.65
  • 56.65
  • 55.86
  • 55.53
  • 53.31
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.65e3
  • 8.65e3
71.04
  • 71.04
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.44e3
  • 9.44e3
68.38
  • 68.38
AEIR
  • AEIR
UBERON:0007383enveloping layer of ectoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
9.51e3
  • 9.51e3
  • 9.51e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.05e4
68.17
  • 68.17
  • 68.17
  • 66.66
  • 64.99
  • 64.99
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.30
  • 66.30
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.04e4
  • 1.04e4
  • 1.41e4
65.05
  • 65.05
  • 52.83
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.05e4
  • 1.05e4
64.70
  • 64.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.88
  • 60.88
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.40
  • 56.40
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
  • 1.31e4
  • 1.34e4
  • 1.34e4
  • 1.42e4
56.23
  • 56.23
  • 56.23
  • 54.97
  • 54.97
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
  • 1.32e4
55.86
  • 55.86
  • 55.86
AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
  • 1.40e4
55.86
  • 55.86
  • 53.10
AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.36e4
  • 1.36e4
  • 1.39e4
54.53
  • 54.53
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.41e4
  • 1.41e4
52.77
  • 52.77
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.41e4
  • 1.41e4
52.70
  • 52.70
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
  • 1.80e4
49.26
  • 49.26
  • 39.67
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000067958.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Bilateria5 genesCompare expression
Opisthokonta9 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000067958.

Cross-references

EnsemblENSDARG00000067958 (sh3gl1a)
ZFINZDB-GENE-030131-4524 (sh3gl1a)
EMBLAL935282, BC153638, CR926137
Uniprot/SPTREMBLQ1MT71, Q1MT71_DANRE

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