D. rerio Gene: gtf3c5 - ENSDARG00000067979 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000067979
Namegtf3c5
Descriptiongeneral transcription factor IIIC, polypeptide 5 [Source:ZFIN;Acc:ZDB-GENE-060810-66]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7156509
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
87.34
  • 87.34
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.23e3
  • 5.23e3
82.49
  • 82.49
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
5.27e3
  • 5.27e3
  • 5.52e3
  • 5.98e3
  • 6.15e3
  • 6.20e3
  • 6.87e3
82.35
  • 82.35
  • 81.51
  • 80.00
  • 79.40
  • 79.25
  • 76.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
5.31e3
  • 5.31e3
  • 5.46e3
  • 6.18e3
  • 6.54e3
  • 8.14e3
82.23
  • 82.23
  • 81.73
  • 79.32
  • 78.11
  • 72.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.51e3
  • 5.51e3
81.57
  • 81.57
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.63e3
  • 5.63e3
81.15
  • 81.15
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.81e3
  • 5.81e3
80.54
  • 80.54
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000106zygote stage
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.01e3
  • 6.01e3
  • 6.37e3
  • 6.70e3
  • 6.96e3
  • 7.54e3
  • 7.56e3
  • 9.28e3
  • 9.29e3
  • 9.38e3
  • 9.52e3
  • 9.59e3
  • 9.79e3
  • 9.87e3
  • 1.03e4
  • 1.06e4
  • 1.10e4
  • 1.14e4
  • 1.21e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.24e4
  • 1.29e4
  • 1.29e4
  • 1.44e4
  • 1.49e4
  • 1.50e4
79.89
  • 79.89
  • 78.67
  • 77.57
  • 76.71
  • 74.74
  • 74.68
  • 68.92
  • 68.91
  • 68.60
  • 68.12
  • 67.91
  • 67.20
  • 66.96
  • 65.61
  • 64.59
  • 63.32
  • 61.75
  • 59.51
  • 59.08
  • 59.08
  • 59.08
  • 58.32
  • 58.32
  • 56.65
  • 56.65
  • 51.82
  • 50.25
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.14e3
  • 6.14e3
79.45
  • 79.45
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.18e3
  • 6.18e3
79.30
  • 79.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.28e3
  • 6.28e3
78.97
  • 78.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.07
  • 78.07
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.64
  • 77.64
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.74e3
  • 6.74e3
77.45
  • 77.45
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
6.77e3
  • 6.77e3
  • 6.91e3
  • 7.05e3
  • 7.63e3
  • 7.85e3
  • 1.03e4
  • 1.04e4
  • 1.07e4
  • 1.14e4
  • 1.15e4
77.32
  • 77.32
  • 76.88
  • 76.40
  • 74.46
  • 73.72
  • 65.65
  • 65.02
  • 64.16
  • 61.93
  • 61.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.31e3
  • 7.31e3
75.53
  • 75.53
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.45e3
  • 7.45e3
  • 9.27e3
  • 9.70e3
  • 1.22e4
75.05
  • 75.05
  • 68.95
  • 67.53
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.16e3
  • 8.16e3
  • 1.21e4
72.69
  • 72.69
  • 59.47
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
  • 1.02e4
72.00
  • 72.00
  • 65.72
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
8.52e3
  • 8.52e3
71.47
  • 71.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.29
  • 71.29
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.71e3
  • 8.71e3
  • 1.45e4
70.83
  • 70.83
  • 51.41
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.74
  • 69.74
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.88e3
  • 9.88e3
  • 1.07e4
  • 1.12e4
66.92
  • 66.92
  • 64.24
  • 62.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.26
  • 65.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.23
  • 64.23
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.64
  • 63.64
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
  • 1.14e4
62.92
  • 62.92
  • 61.92
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.15e4
  • 1.15e4
61.63
  • 61.63
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.95
  • 60.95
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.62
  • 60.62
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.70
  • 53.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.96
  • 41.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi14 species14 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000067979.

Cross-references

EnsemblENSDARG00000067979 (gtf3c5)
ZFINZDB-GENE-060810-66 (gtf3c5)
EMBLFP015918
Uniprot/SPTREMBLE7EZ29, E7EZ29_DANRE

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